X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FFeatureSettings.java;h=bb1394a72c652ab29032fa2dd87f1c213f4ffcc4;hb=0896dd47a711b260d6f79e1e18d1bb8aa822e111;hp=9e40b1a127d7fc03e12ad4dd6e5e2736f9e9161e;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git

diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java
index 9e40b1a..bb1394a 100755
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -476,7 +476,7 @@ public class FeatureSettings
     fr.setColour(feature, col);
     featurePanel.removeAll();
     resetTable(false);
-    ap.repaint();
+    ap.paintAlignment(true);
   }
 
   public void mouseEntered(MouseEvent evt)