X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FFinder.java;h=4c195e819766edd3d3ed781a2c00bb68c9b3a21b;hb=2e699d341f8e64868e3c279f9c02af617c4e9b44;hp=47b756d9767f7cc6273c4429420b1529ec7aa853;hpb=df9b85c1cf39894039018499fe802406cc37f209;p=jalview.git

diff --git a/src/jalview/appletgui/Finder.java b/src/jalview/appletgui/Finder.java
index 47b756d..4c195e8 100755
--- a/src/jalview/appletgui/Finder.java
+++ b/src/jalview/appletgui/Finder.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -86,6 +86,7 @@ public class Finder extends Panel implements ActionListener
   {
 
     CutAndPasteTransfer cap = new CutAndPasteTransfer(true, null);
+    cap.ok.setLabel("Accept");
     Dialog dialog = new Dialog(ap.alignFrame, "Enter New Feature Name", true);
     dialog.add(cap);
 
@@ -123,6 +124,11 @@ public class Finder extends Panel implements ActionListener
 
   void doSearch(boolean findAll)
   {
+    if(jalview.bin.JalviewLite.currentAlignFrame!=null)
+    {
+      ap = jalview.bin.JalviewLite.currentAlignFrame.alignPanel;
+      av = ap.av;
+    }
     createNewGroup.setEnabled(false);
 
     String searchString = textfield.getText();
@@ -185,7 +191,7 @@ public class Finder extends Panel implements ActionListener
         continue;
       }
 
-      item = seq.getSequence();
+      item = seq.getSequenceAsString();
       if(!caseSensitive.getState())
         item = item.toUpperCase();