X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FFinder.java;h=f44387f0b0a1b7cd92de10abaf34c6f521d89d74;hb=ca87cef11606dd9b1ba66222cea87e000e556817;hp=ee0d4a074478478911c1622b5220021e6c1588be;hpb=dfc18d64376ae95cfdbf3c112825587a8891179c;p=jalview.git

diff --git a/src/jalview/appletgui/Finder.java b/src/jalview/appletgui/Finder.java
index ee0d4a0..f44387f 100644
--- a/src/jalview/appletgui/Finder.java
+++ b/src/jalview/appletgui/Finder.java
@@ -20,12 +20,12 @@
  */
 package jalview.appletgui;
 
+import jalview.api.AlignViewportI;
 import jalview.datamodel.SearchResultMatchI;
 import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.util.MessageManager;
-import jalview.viewmodel.AlignmentViewport;
 
 import java.awt.Button;
 import java.awt.Checkbox;
@@ -42,25 +42,48 @@ import java.awt.event.KeyEvent;
 import java.awt.event.WindowAdapter;
 import java.awt.event.WindowEvent;
 import java.util.ArrayList;
+import java.util.HashMap;
 import java.util.List;
+import java.util.Map;
 import java.util.Vector;
 
 public class Finder extends Panel implements ActionListener
 {
-  AlignmentViewport av;
+  private AlignViewportI av;
 
-  AlignmentPanel ap;
+  private AlignmentPanel ap;
 
-  Frame frame;
+  private TextField textfield = new TextField();
 
-  SearchResultsI searchResults;
+  private Button findAll = new Button();
 
-  int seqIndex = 0;
+  private Button findNext = new Button();
 
-  int resIndex = -1;
+  private Button createFeatures = new Button();
+
+  private Checkbox caseSensitive = new Checkbox();
+
+  private Checkbox searchDescription = new Checkbox();
+
+  private SearchResultsI searchResults;
+
+  /*
+   * sequence index and residue position of last match,
+   * for current search and per viewport
+   */
+  private int seqIndex = 0;
+
+  private int resIndex = -1;
+
+  Map<AlignViewportI, Integer> seqIndices;
+
+  Map<AlignViewportI, Integer> resIndices;
 
   public Finder(final AlignmentPanel ap)
   {
+    seqIndices = new HashMap<>();
+    resIndices = new HashMap<>();
+
     try
     {
       jbInit();
@@ -72,7 +95,7 @@ public class Finder extends Panel implements ActionListener
 
     this.av = ap.av;
     this.ap = ap;
-    frame = new Frame();
+    Frame frame = new Frame();
     frame.add(this);
     jalview.bin.JalviewLite.addFrame(frame,
             MessageManager.getString("action.find"), 340, 120);
@@ -107,13 +130,13 @@ public class Finder extends Panel implements ActionListener
       seqIndex = 0;
       doSearch(true);
     }
-    else if (evt.getSource() == createNewGroup)
+    else if (evt.getSource() == createFeatures)
     {
-      createNewGroup_actionPerformed();
+      createFeatures_actionPerformed();
     }
   }
 
-  public void createNewGroup_actionPerformed()
+  public void createFeatures_actionPerformed()
   {
     List<SequenceI> seqs = new ArrayList<>();
     List<SequenceFeature> features = new ArrayList<>();
@@ -135,26 +158,40 @@ public class Finder extends Panel implements ActionListener
     }
   }
 
-  void doSearch(boolean findAll)
+  void doSearch(boolean doFindAll)
   {
     if (ap.av.applet.currentAlignFrame != null)
     {
       ap = ap.av.applet.currentAlignFrame.alignPanel;
       av = ap.av;
+      seqIndex = 0;
+      resIndex = -1;
+      if (seqIndices.containsKey(av))
+      {
+        seqIndex = seqIndices.get(av).intValue();
+      }
+      if (resIndices.containsKey(av))
+      {
+        resIndex = resIndices.get(av).intValue();
+      }
     }
-    createNewGroup.setEnabled(false);
+    createFeatures.setEnabled(false);
     jalview.analysis.Finder finder = new jalview.analysis.Finder(
             av.getAlignment(), av.getSelectionGroup(), seqIndex, resIndex);
     finder.setCaseSensitive(caseSensitive.getState());
     finder.setIncludeDescription(searchDescription.getState());
-    finder.setFindAll(findAll);
+    finder.setFindAll(doFindAll);
 
     String searchString = textfield.getText();
 
     finder.find(searchString);
+
     seqIndex = finder.getSeqIndex();
     resIndex = finder.getResIndex();
+    seqIndices.put(av, seqIndex);
+    resIndices.put(av, resIndex);
     searchResults = finder.getSearchResults();
+
     Vector<SequenceI> idMatch = finder.getIdMatch();
     ap.idPanel.highlightSearchResults(idMatch);
 
@@ -164,7 +201,7 @@ public class Finder extends Panel implements ActionListener
     }
     else
     {
-      createNewGroup.setEnabled(true);
+      createFeatures.setEnabled(true);
     }
 
     // if allResults is null, this effectively switches displaySearch flag in
@@ -181,7 +218,7 @@ public class Finder extends Panel implements ActionListener
     }
     else
     {
-      if (findAll)
+      if (doFindAll)
       {
         String message = (idMatch.size() > 0) ? "" + idMatch.size() + " IDs"
                 : "";
@@ -209,28 +246,10 @@ public class Finder extends Panel implements ActionListener
     }
   }
 
-  Label jLabel1 = new Label();
-
-  protected TextField textfield = new TextField();
-
-  protected Button findAll = new Button();
-
-  protected Button findNext = new Button();
-
-  Panel actionsPanel = new Panel();
-
-  GridLayout gridLayout1 = new GridLayout();
-
-  protected Button createNewGroup = new Button();
-
-  Checkbox caseSensitive = new Checkbox();
-
-  Checkbox searchDescription = new Checkbox();
-
   private void jbInit() throws Exception
   {
+    Label jLabel1 = new Label(MessageManager.getString("action.find"));
     jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
-    jLabel1.setText(MessageManager.getString("action.find"));
     jLabel1.setBounds(new Rectangle(3, 30, 34, 15));
     this.setLayout(null);
     textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
@@ -241,7 +260,7 @@ public class Finder extends Panel implements ActionListener
       @Override
       public void keyTyped(KeyEvent e)
       {
-        textfield_keyTyped(e);
+        textfield_keyTyped();
       }
     });
     textfield.addActionListener(this);
@@ -252,15 +271,18 @@ public class Finder extends Panel implements ActionListener
     findNext.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
     findNext.setLabel(MessageManager.getString("action.find_next"));
     findNext.addActionListener(this);
+
+    Panel actionsPanel = new Panel();
     actionsPanel.setBounds(new Rectangle(195, 5, 141, 64));
+    GridLayout gridLayout1 = new GridLayout();
     actionsPanel.setLayout(gridLayout1);
     gridLayout1.setHgap(0);
     gridLayout1.setRows(3);
     gridLayout1.setVgap(2);
-    createNewGroup.setEnabled(false);
-    createNewGroup.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
-    createNewGroup.setLabel(MessageManager.getString("label.new_feature"));
-    createNewGroup.addActionListener(this);
+    createFeatures.setEnabled(false);
+    createFeatures.setFont(new java.awt.Font("Verdana", Font.PLAIN, 10));
+    createFeatures.setLabel(MessageManager.getString("label.new_feature"));
+    createFeatures.addActionListener(this);
     caseSensitive.setLabel(MessageManager.getString("label.match_case"));
     caseSensitive.setBounds(new Rectangle(30, 39, 126, 23));
 
@@ -269,7 +291,7 @@ public class Finder extends Panel implements ActionListener
     searchDescription.setBounds(new Rectangle(30, 59, 170, 23));
     actionsPanel.add(findNext, null);
     actionsPanel.add(findAll, null);
-    actionsPanel.add(createNewGroup, null);
+    actionsPanel.add(createFeatures, null);
     this.add(caseSensitive);
     this.add(textfield, null);
     this.add(jLabel1, null);
@@ -277,7 +299,7 @@ public class Finder extends Panel implements ActionListener
     this.add(searchDescription);
   }
 
-  void textfield_keyTyped(KeyEvent e)
+  void textfield_keyTyped()
   {
     findNext.setEnabled(true);
   }