X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FIdCanvas.java;h=399506ed1a9f73cc59981bcad81b8ff13cda77dc;hb=0149a3aec3e61c36ee788adfbd53bf560407e1e0;hp=3c3c52c896d2cfabc41ddeb24582c2a34e8d645b;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git

diff --git a/src/jalview/appletgui/IdCanvas.java b/src/jalview/appletgui/IdCanvas.java
index 3c3c52c..399506e 100755
--- a/src/jalview/appletgui/IdCanvas.java
+++ b/src/jalview/appletgui/IdCanvas.java
@@ -44,7 +44,7 @@ public class IdCanvas
   {
     setLayout(null);
     this.av = av;
-    PaintRefresher.Register(this);
+    PaintRefresher.Register(this, av.alignment);
   }
 
   public void drawIdString(Graphics gg, SequenceI s, int i, int starty,
@@ -55,7 +55,7 @@ public class IdCanvas
     if (searchResults != null && searchResults.contains(s))
     {
       gg.setColor(Color.black);
-      gg.fillRect(0, AlignmentUtil.getPixelHeight(starty, i, charHeight) + ypos,
+      gg.fillRect(0, ((i - starty) * charHeight) + ypos,
                   getSize().width, charHeight);
       gg.setColor(Color.white);
     }
@@ -63,14 +63,14 @@ public class IdCanvas
              av.getSelectionGroup().sequences.contains(s))
     {
       gg.setColor(Color.lightGray);
-      gg.fillRect(0, AlignmentUtil.getPixelHeight(starty, i, charHeight) + ypos,
+      gg.fillRect(0, ((i - starty) * charHeight) + ypos,
                   getSize().width, charHeight);
       gg.setColor(Color.white);
     }
     else
     {
       gg.setColor(s.getColor());
-      gg.fillRect(0, AlignmentUtil.getPixelHeight(starty, i, charHeight) + ypos,
+      gg.fillRect(0, ((i - starty) * charHeight) + ypos,
                   getSize().width, charHeight);
       gg.setColor(Color.black);
     }
@@ -82,7 +82,7 @@ public class IdCanvas
     }
 
     gg.drawString(string, 0,
-                  AlignmentUtil.getPixelHeight(starty, i, charHeight) + ypos +
+                  ((i - starty) * charHeight) + ypos +
                   charHeight - (charHeight / 5));
 
   }
@@ -228,7 +228,7 @@ public class IdCanvas
         gg.setColor(currentColor);
 
         gg.fillRect(0,
-                    AlignmentUtil.getPixelHeight(starty, i, av.charHeight),
+                    ((i - starty) * av.charHeight),
                     getSize().width,
                     av.charHeight);
 
@@ -239,7 +239,7 @@ public class IdCanvas
           string = av.alignment.getSequenceAt(i).getDisplayId();
         }
         gg.drawString(string, 0,
-                      AlignmentUtil.getPixelHeight(starty, i, av.charHeight) +
+                      ((i - starty) * av.charHeight) +
                       av.charHeight - (av.charHeight / 5));
       }