X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FIdCanvas.java;h=d72e91f72c9f70007e9e3bc1feba4dbe7dc02f2e;hb=4eb1ed22600411fe5b6e9ac93084b45429ccfad6;hp=5204094d21079cb859ad0e8597ce1d0968920a31;hpb=685909b39c1c85ff304ecea9763925de75b2cf77;p=jalview.git

diff --git a/src/jalview/appletgui/IdCanvas.java b/src/jalview/appletgui/IdCanvas.java
index 5204094..d72e91f 100755
--- a/src/jalview/appletgui/IdCanvas.java
+++ b/src/jalview/appletgui/IdCanvas.java
@@ -57,8 +57,7 @@ public class IdCanvas extends Panel
   }
 
   public void drawIdString(Graphics gg, boolean hiddenRows, SequenceI s,
-          int i, int starty,
-          int ypos)
+          int i, int starty, int ypos)
   {
     int charHeight = av.getCharHeight();
 
@@ -139,11 +138,13 @@ public class IdCanvas extends Panel
     repaint();
   }
 
+  @Override
   public void update(Graphics g)
   {
     paint(g);
   }
 
+  @Override
   public void paint(Graphics g)
   {
     if (getSize().height < 0 || getSize().width < 0)
@@ -187,6 +188,7 @@ public class IdCanvas extends Panel
    * local copy of av.getCharHeight set at top of drawIds
    */
   private int avcharHeight;
+
   void drawIds(int starty, int endy)
   {
     // hardwired italic IDs in applet currently
@@ -356,19 +358,17 @@ public class IdCanvas extends Panel
     gg.setColor(Color.blue);
     if (below)
     {
-      gg.fillPolygon(new int[]
-      { getSize().width - avcharHeight, getSize().width - avcharHeight,
-          getSize().width }, new int[]
-      { (i - starty) * avcharHeight + yoffset,
+      gg.fillPolygon(new int[] { getSize().width - avcharHeight,
+          getSize().width - avcharHeight, getSize().width }, new int[] {
+          (i - starty) * avcharHeight + yoffset,
           (i - starty) * avcharHeight + yoffset + avcharHeight / 4,
           (i - starty) * avcharHeight + yoffset }, 3);
     }
     if (above)
     {
-      gg.fillPolygon(new int[]
-      { getSize().width - avcharHeight, getSize().width - avcharHeight,
-          getSize().width }, new int[]
-      { (i - starty + 1) * avcharHeight + yoffset,
+      gg.fillPolygon(new int[] { getSize().width - avcharHeight,
+          getSize().width - avcharHeight, getSize().width }, new int[] {
+          (i - starty + 1) * avcharHeight + yoffset,
           (i - starty + 1) * avcharHeight + yoffset - avcharHeight / 4,
           (i - starty + 1) * avcharHeight + yoffset }, 3);
 
@@ -380,7 +380,7 @@ public class IdCanvas extends Panel
     Font bold = new Font(av.getFont().getName(), Font.BOLD, av.getFont()
             .getSize());
 
-    if (av.isHiddenRepSequence(seq))
+    if (av.isReferenceSeq(seq) || av.isHiddenRepSequence(seq))
     {
       gg.setFont(bold);
       return true;