X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FIdPanel.java;h=03f5b25f5b59fa9c6d35250112f34b91701d9779;hb=2e699d341f8e64868e3c279f9c02af617c4e9b44;hp=eab849b7581f232090c910dbbd5bdb1ad25422f8;hpb=425c3769b24f953eed5af873d0e832e76c4d9c3a;p=jalview.git

diff --git a/src/jalview/appletgui/IdPanel.java b/src/jalview/appletgui/IdPanel.java
index eab849b..03f5b25 100755
--- a/src/jalview/appletgui/IdPanel.java
+++ b/src/jalview/appletgui/IdPanel.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -50,12 +50,12 @@ public class IdPanel
     idCanvas.addMouseMotionListener(this);
 
     String label, url;
-    if(parent.alignFrame.applet!=null)
+    if(av.applet!=null)
     {
       for (int i = 1; i < 10; i++)
       {
-        label = parent.alignFrame.applet.getParameter("linkLabel_" + i);
-        url = parent.alignFrame.applet.getParameter("linkURL_" + i);
+        label = av.applet.getParameter("linkLabel_" + i);
+        url = av.applet.getParameter("linkURL_" + i);
 
         if (label != null && url != null)
           links.addElement(label + "|" + url);
@@ -230,6 +230,12 @@ public class IdPanel
   {
 
     lastid = start;
+
+    if (end >= av.getAlignment().getHeight())
+    {
+      end = av.getAlignment().getHeight() - 1;
+    }
+
     if (end < start)
     {
       int tmp = start;
@@ -256,7 +262,7 @@ public class IdPanel
       av.getSelectionGroup().recalcConservation();
 
     mouseDragging = false;
-    PaintRefresher.Refresh(this, av.alignment);
+    PaintRefresher.Refresh(this, av.getSequenceSetId());
   }
 
   public void highlightSearchResults(java.util.Vector found)