X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FIdPanel.java;h=182f20eb5138ab4adbf8072b2936080933fe70f6;hb=b4ff9affaf85176402f148c100e24b8546052173;hp=ed96b5524fcb2915d452b41938757f7d82ebddbb;hpb=37de9310bec3501cbc6381e0c3dcb282fcaad812;p=jalview.git diff --git a/src/jalview/appletgui/IdPanel.java b/src/jalview/appletgui/IdPanel.java index ed96b55..182f20e 100755 --- a/src/jalview/appletgui/IdPanel.java +++ b/src/jalview/appletgui/IdPanel.java @@ -20,6 +20,9 @@ */ package jalview.appletgui; +import static jalview.util.UrlConstants.EMBLEBI_STRING; +import static jalview.util.UrlConstants.SRS_STRING; + import jalview.datamodel.Sequence; import jalview.datamodel.SequenceFeature; import jalview.datamodel.SequenceGroup; @@ -82,19 +85,16 @@ public class IdPanel extends Panel implements MouseListener, } { // upgrade old SRS link - int srsPos = links - .indexOf("SRS|http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-newId+(([uniprot-all:$SEQUENCE_ID$]))+-view+SwissEntry"); + int srsPos = links.indexOf(SRS_STRING); if (srsPos > -1) { - links.setElementAt( - "EMBL-EBI Search|http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$", - srsPos); + links.setElementAt(EMBLEBI_STRING, srsPos); } } if (links.size() < 1) { links = new java.util.Vector(); - links.addElement("EMBL-EBI Search|http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"); + links.addElement(EMBLEBI_STRING); } } @@ -246,7 +246,14 @@ public class IdPanel extends Panel implements MouseListener, url = null; continue; } - ; + + if (urlLink.usesDBAccession()) + { + // this URL requires an accession id, not the name of a sequence + url = null; + continue; + } + if (!urlLink.isValid()) { System.err.println(urlLink.getInvalidMessage());