X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FOverviewPanel.java;h=3301543bf1828f32b9ca9063a4c0aee97c78e353;hb=ad15cff29620f960119f80176f1fd443da9f6763;hp=4d2aeed47be47b6defe9430055bc94ff6a4194ba;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git
diff --git a/src/jalview/appletgui/OverviewPanel.java b/src/jalview/appletgui/OverviewPanel.java
index 4d2aeed..3301543 100755
--- a/src/jalview/appletgui/OverviewPanel.java
+++ b/src/jalview/appletgui/OverviewPanel.java
@@ -1,19 +1,21 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
@@ -67,7 +69,6 @@ public class OverviewPanel extends Panel implements Runnable,
sr.renderGaps = false;
sr.forOverview = true;
fr = new FeatureRenderer(av);
- fr.overview = true;
// scale the initial size of overviewpanel to shape of alignment
float initialScale = (float) av.getAlignment().getWidth()
@@ -227,10 +228,9 @@ public class OverviewPanel extends Panel implements Runnable,
return;
}
- if (av.showSequenceFeatures)
+ if (av.isShowSequenceFeatures())
{
- fr.featureGroups = ap.seqPanel.seqCanvas.getFeatureRenderer().featureGroups;
- fr.featureColours = ap.seqPanel.seqCanvas.getFeatureRenderer().featureColours;
+ fr.transferSettings(ap.seqPanel.seqCanvas.fr);
}
resizing = true;
@@ -258,7 +258,7 @@ public class OverviewPanel extends Panel implements Runnable,
int alwidth = av.getAlignment().getWidth();
int alheight = av.getAlignment().getHeight();
- if (av.showSequenceFeatures)
+ if (av.isShowSequenceFeatures())
{
fr.transferSettings(ap.seqPanel.seqCanvas.getFeatureRenderer());
}
@@ -335,7 +335,7 @@ public class OverviewPanel extends Panel implements Runnable,
{
color = sr.getResidueBoxColour(seq, lastcol);
- if (av.showSequenceFeatures)
+ if (av.isShowSequenceFeatures())
{
color = fr.findFeatureColour(color, seq, lastcol);
}