X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FPCAPanel.java;h=026ca09ff3ce5f2b7d14513f2d46922651c2309a;hb=f85c8c88d6947b9f290409f1271429144df2c120;hp=399fce8a68d719972e58ea4a825e6c1f6c9ad945;hpb=e808c2394befe0655fc9dbd9928160cf4c3b1aa3;p=jalview.git

diff --git a/src/jalview/appletgui/PCAPanel.java b/src/jalview/appletgui/PCAPanel.java
index 399fce8..026ca09 100755
--- a/src/jalview/appletgui/PCAPanel.java
+++ b/src/jalview/appletgui/PCAPanel.java
@@ -40,7 +40,6 @@ public class PCAPanel
 
   public PCAPanel(AlignViewport av)
   {
-
     this.av = av;
     if (av.getSelectionGroup()!=null && av.getSelectionGroup().getSize() > 3)
     {
@@ -58,8 +57,14 @@ public class PCAPanel
         seqs[i] = av.getAlignment().getSequenceAt(i);
       }
     }
+
     rc = new RotatableCanvas(av);
     add(rc, BorderLayout.CENTER);
+
+    jalview.bin.JalviewLite.addFrame(this, "Principal component analysis",
+                                       400, 400);
+
+
     Thread worker = new Thread(this);
     worker.start();
   }
@@ -109,6 +114,7 @@ public class PCAPanel
               rc.setPoints(points, pca.getM().rows);
               rc.repaint();
               seqs = null;
+              this.repaint();
   }
 
   void doDimensionChange()
@@ -149,4 +155,20 @@ public class PCAPanel
     doDimensionChange();
   }
 
+  public void values_actionPerformed(ActionEvent actionEvent)
+  {
+
+    CutAndPasteTransfer cap = new CutAndPasteTransfer(false, null);
+    Frame frame = new Frame();
+    frame.add(cap);
+    jalview.bin.JalviewLite.addFrame(frame, "PCA details", 500, 500);
+
+      cap.setText(pca.getDetails());
+  }
+
+  public void labels_itemStateChanged(ItemEvent itemEvent)
+  {
+    rc.showLabels( labels.getState() );
+  }
+
 }