X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FPCAPanel.java;h=32f02fea66547e750e078426093f0a8e63851f04;hb=4935082f08648ab92743e14e5e2dfefa3e0dcd4d;hp=8c87d7c771baa85c1ebe3e375a2ecc0e2716905e;hpb=0353fb50f77f7d60e3c88c297298d04e0b1b80b3;p=jalview.git

diff --git a/src/jalview/appletgui/PCAPanel.java b/src/jalview/appletgui/PCAPanel.java
old mode 100755
new mode 100644
index 8c87d7c..32f02fe
--- a/src/jalview/appletgui/PCAPanel.java
+++ b/src/jalview/appletgui/PCAPanel.java
@@ -1,29 +1,30 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.appletgui;
 
-import java.util.*;
-
 import java.awt.*;
 import java.awt.event.*;
 
-import jalview.analysis.*;
 import jalview.datamodel.*;
+import jalview.util.MessageManager;
 import jalview.viewmodel.PCAModel;
 
 public class PCAPanel extends EmbmenuFrame implements Runnable,
@@ -55,11 +56,12 @@ public class PCAPanel extends EmbmenuFrame implements Runnable,
     }
 
     this.av = av;
-    AlignmentView seqstrings = av
-            .getAlignmentView(av.getSelectionGroup() != null);
+    boolean selected = av.getSelectionGroup() != null
+            && av.getSelectionGroup().getSize() > 0;
+    AlignmentView seqstrings = av.getAlignmentView(selected);
     boolean nucleotide = av.getAlignment().isNucleotide();
     SequenceI[] seqs;
-    if (av.getSelectionGroup() == null)
+    if (!selected)
     {
       seqs = av.getAlignment().getSequencesArray();
     }
@@ -85,7 +87,8 @@ public class PCAPanel extends EmbmenuFrame implements Runnable,
     embedMenuIfNeeded(rc);
     add(rc, BorderLayout.CENTER);
 
-    jalview.bin.JalviewLite.addFrame(this, "Principal component analysis",
+    jalview.bin.JalviewLite.addFrame(this,
+            MessageManager.getString("label.principal_component_analysis"),
             475, 400);
 
     Thread worker = new Thread(this);
@@ -132,7 +135,7 @@ public class PCAPanel extends EmbmenuFrame implements Runnable,
     {
       return;
     }
-    
+
     int dim1 = top - xCombobox.getSelectedIndex();
     int dim2 = top - yCombobox.getSelectedIndex();
     int dim3 = top - zCombobox.getSelectedIndex();
@@ -176,6 +179,10 @@ public class PCAPanel extends EmbmenuFrame implements Runnable,
     {
       zCombobox_actionPerformed();
     }
+    else if (evt.getSource() == labels)
+    {
+      labels_itemStateChanged(evt);
+    }
     else if (evt.getSource() == nuclSetting)
     {
       if (!pcaModel.isNucleotide())
@@ -215,7 +222,8 @@ public class PCAPanel extends EmbmenuFrame implements Runnable,
     CutAndPasteTransfer cap = new CutAndPasteTransfer(false, null);
     Frame frame = new Frame();
     frame.add(cap);
-    jalview.bin.JalviewLite.addFrame(frame, "PCA details", 500, 500);
+    jalview.bin.JalviewLite.addFrame(frame,
+            MessageManager.getString("label.pca_details"), 500, 500);
 
     cap.setText(pcaModel.getDetails());
   }
@@ -312,20 +320,21 @@ public class PCAPanel extends EmbmenuFrame implements Runnable,
     xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
     xCombobox.addItemListener(this);
     resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
-    resetButton.setLabel("Reset");
+    resetButton.setLabel(MessageManager.getString("action.reset"));
     resetButton.addActionListener(this);
     this.setMenuBar(menuBar1);
-    menu1.setLabel("File");
-    menu2.setLabel("View");
-    calcSettings.setLabel("Change Parameters");
-    labels.setLabel("Labels");
+    menu1.setLabel(MessageManager.getString("action.file"));
+    menu2.setLabel(MessageManager.getString("action.view"));
+    calcSettings.setLabel(MessageManager.getString("action.change_params"));
+    labels.setLabel(MessageManager.getString("label.labels"));
     labels.addItemListener(this);
-    values.setLabel("Output Values...");
+    values.setLabel(MessageManager.getString("label.output_values"));
     values.addActionListener(this);
-    inputData.setLabel("Input Data...");
-    nuclSetting.setLabel("Nucleotide matrix");
+    inputData.setLabel(MessageManager.getString("label.input_data"));
+    nuclSetting.setLabel(MessageManager
+            .getString("label.nucleotide_matrix"));
     nuclSetting.addItemListener(this);
-    protSetting.setLabel("Protein matrix");
+    protSetting.setLabel(MessageManager.getString("label.protein_matrix"));
     protSetting.addItemListener(this);
     this.add(jPanel2, BorderLayout.SOUTH);
     jPanel2.add(jLabel1, null);