X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FPCAPanel.java;h=6465ee839e13046ccf0d41040ba8c903c5992e01;hb=7bc213bae5828287329a3490faba291706599b03;hp=a75de066eaee9a93d56416be9c563a12f32768d0;hpb=de468b0bf50850a89c6a8a7acfa4ff5b689ffed1;p=jalview.git

diff --git a/src/jalview/appletgui/PCAPanel.java b/src/jalview/appletgui/PCAPanel.java
index a75de06..6465ee8 100755
--- a/src/jalview/appletgui/PCAPanel.java
+++ b/src/jalview/appletgui/PCAPanel.java
@@ -57,10 +57,10 @@ public class PCAPanel
     }
 
     this.av = av;
-    if (av.getSelectionGroup()!=null && av.getSelectionGroup().getSize() > 3)
+    if (av.getSelectionGroup()!=null && av.getSelectionGroup().getSize(false) > 3)
     {
-      seqs = new Sequence[av.getSelectionGroup().getSize()];
-      for (int i = 0; i < av.getSelectionGroup().getSize(); i++)
+      seqs = new Sequence[av.getSelectionGroup().getSize(false)];
+      for (int i = 0; i < av.getSelectionGroup().getSize(false); i++)
       {
         seqs[i] = av.getSelectionGroup().getSequenceAt(i);
       }
@@ -90,7 +90,7 @@ public class PCAPanel
    */
   public void run()
   {
-              pca = new PCA(seqs);
+              pca = null;//new PCA(seqs);
               pca.run();
 
               // Now find the component coordinates