X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FPaintRefresher.java;h=7b54b1c1eac61331fba7f398ea1bfbcae2639bab;hb=27f5f6fdfea52770ebd513c4607a6dde87821d48;hp=4e1bfaf2c86649ade08baeeefc98fac3194c6635;hpb=f52f7b378972cc884b5d3e5cc250f89667f558f7;p=jalview.git
diff --git a/src/jalview/appletgui/PaintRefresher.java b/src/jalview/appletgui/PaintRefresher.java
index 4e1bfaf..7b54b1c 100755
--- a/src/jalview/appletgui/PaintRefresher.java
+++ b/src/jalview/appletgui/PaintRefresher.java
@@ -1,19 +1,22 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- *
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
* This file is part of Jalview.
- *
+ *
* Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
@@ -26,7 +29,7 @@ import jalview.datamodel.*;
/**
* DOCUMENT ME!
- *
+ *
* @author $author$
* @version $Revision$
*/
@@ -36,7 +39,7 @@ public class PaintRefresher
/**
* DOCUMENT ME!
- *
+ *
* @param comp
* DOCUMENT ME!
* @param al
@@ -184,9 +187,11 @@ public class PaintRefresher
{
if (i < comp.getHeight())
{
- // TODO: the following does not trigger any recalculation of height/etc, or maintain the dataset
+ // TODO: the following does not trigger any recalculation of
+ // height/etc, or maintain the dataset
List alsq;
- synchronized (alsq=comp.getSequences()) {
+ synchronized (alsq = comp.getSequences())
+ {
alsq.add(i, a1[i]);
}
}
@@ -244,7 +249,8 @@ public class PaintRefresher
}
}
AlignmentPanel[] result = new AlignmentPanel[tmp.size()];
- for (int ix=0;ix