X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FPairwiseAlignPanel.java;h=566aad9a58be2cdcf3dda50926050baf4ab682b5;hb=ca160187a050f6d4e50158cd5b51f75c83a7179e;hp=bc775c63af1083cb7714efd23cec4c720d9bc813;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git

diff --git a/src/jalview/appletgui/PairwiseAlignPanel.java b/src/jalview/appletgui/PairwiseAlignPanel.java
index bc775c6..566aad9 100644
--- a/src/jalview/appletgui/PairwiseAlignPanel.java
+++ b/src/jalview/appletgui/PairwiseAlignPanel.java
@@ -102,7 +102,7 @@ public class PairwiseAlignPanel extends Panel implements ActionListener
 
     if (count > 2)
     {
-      System.out.println(
+      jalview.bin.Console.outPrintln(
               "Pairwise alignment scaled similarity score matrix\n");
 
       for (int i = 0; i < count; i++)
@@ -111,7 +111,7 @@ public class PairwiseAlignPanel extends Panel implements ActionListener
                 ("" + i) + " " + seqs[i].getName());
       }
 
-      System.out.println("\n");
+      jalview.bin.Console.outPrintln("\n");
 
       for (int i = 0; i < count; i++)
       {
@@ -122,7 +122,7 @@ public class PairwiseAlignPanel extends Panel implements ActionListener
         }
       }
 
-      System.out.println("\n");
+      jalview.bin.Console.outPrintln("\n");
     }
   }