X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FPairwiseAlignPanel.java;h=d0b0c986e7bae3c1c8f2b1df8b8a3380830f0d55;hb=df9b85c1cf39894039018499fe802406cc37f209;hp=0dd3253e66551cbd5cad6dcf30a95527c2839222;hpb=bf2bf43c980b18a26b724d2a2d51dddc1a79a185;p=jalview.git

diff --git a/src/jalview/appletgui/PairwiseAlignPanel.java b/src/jalview/appletgui/PairwiseAlignPanel.java
index 0dd3253..d0b0c98 100755
--- a/src/jalview/appletgui/PairwiseAlignPanel.java
+++ b/src/jalview/appletgui/PairwiseAlignPanel.java
@@ -47,7 +47,7 @@ public class PairwiseAlignPanel
     float scores[][] = new float[ap.av.alignment.getHeight()][ap.av.alignment.
         getHeight()];
     double totscore = 0;
-    int count = ap.av.getSelectionGroup().getSize();
+    int count = ap.av.getSelectionGroup().getSize(false);
 
     int acount = 0;
     Sequence seq;