X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FRedundancyPanel.java;h=15478620b15ac6a51d07cb350bac5ef9b0003fd9;hb=35bef7106ec457c8240eb0656b0901c77cf362da;hp=3d7c80f232339feeaa6a9d9d11b77ac3f47bcef4;hpb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;p=jalview.git
diff --git a/src/jalview/appletgui/RedundancyPanel.java b/src/jalview/appletgui/RedundancyPanel.java
index 3d7c80f..1547862 100644
--- a/src/jalview/appletgui/RedundancyPanel.java
+++ b/src/jalview/appletgui/RedundancyPanel.java
@@ -1,19 +1,21 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.appletgui;
@@ -51,7 +53,8 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
applyButton.setVisible(true);
allGroupsCheck.setVisible(false);
- label.setText(MessageManager.getString("label.enter_redundancy_threshold"));
+ label.setText(MessageManager
+ .getString("label.enter_redundancy_threshold"));
valueField.setText("100");
slider.setVisibleAmount(1);
@@ -70,8 +73,8 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
frame = new Frame();
frame.add(this);
- jalview.bin.JalviewLite.addFrame(frame,
- MessageManager.getString("label.redundancy_threshold_selection"), 400, 100);
+ jalview.bin.JalviewLite.addFrame(frame, MessageManager
+ .getString("label.redundancy_threshold_selection"), 400, 100);
frame.addWindowListener(this);
@@ -125,7 +128,8 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
redundancy = AlignSeq.computeRedundancyMatrix(originalSequences,
omitHidden, start, end, false);
- label.setText(MessageManager.getString("label.enter_redundancy_threshold"));
+ label.setText(MessageManager
+ .getString("label.enter_redundancy_threshold"));
slider.setVisible(true);
applyButton.setEnabled(true);
valueField.setVisible(true);
@@ -192,7 +196,7 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
}
}
- EditCommand cut = new EditCommand("Remove Redundancy",
+ EditCommand cut = new EditCommand(MessageManager.getString("action.remove_redundancy"),
EditCommand.CUT, deleted, 0, width, ap.av.getAlignment());
AlignmentI alignment = ap.av.getAlignment();
for (int i = 0; i < del.size(); i++)
@@ -209,8 +213,7 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
ap.alignFrame.addHistoryItem(cut);
PaintRefresher.Refresh(this, ap.av.getSequenceSetId(), true, true);
- // ap.av.firePropertyChange("alignment", null, ap.av.getAlignment()
- // .getSequences());
+ ap.av.firePropertyChange("alignment", null, ap.av.getAlignment().getSequences());
}
}
@@ -224,6 +227,7 @@ public class RedundancyPanel extends SliderPanel implements Runnable,
{
ap.av.historyList.removeElement(command);
ap.alignFrame.updateEditMenuBar();
+ ap.av.firePropertyChange("alignment", null, ap.av.getAlignment().getSequences());
}
ap.paintAlignment(true);