X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FRotatableCanvas.java;h=36e0859114bac2960e20ff99c40e307610b07842;hb=bad9b1c3e957e44c2fa5ad3a0717ea2a40c1bc12;hp=03b13db922871c129cde6f8b0f54002664d71629;hpb=174230b4233d9ce80f94527768d2cd2f76da11ab;p=jalview.git

diff --git a/src/jalview/appletgui/RotatableCanvas.java b/src/jalview/appletgui/RotatableCanvas.java
index 03b13db..36e0859 100755
--- a/src/jalview/appletgui/RotatableCanvas.java
+++ b/src/jalview/appletgui/RotatableCanvas.java
@@ -99,7 +99,7 @@ public class RotatableCanvas
   {
     this.points = points;
     this.npoint = npoint;
-    PaintRefresher.Register(this, av.alignment);
+    PaintRefresher.Register(this, av.getSequenceSetId());
 
     prefsize = getPreferredSize();
     orig = new float[npoint][3];
@@ -371,18 +371,18 @@ public class RotatableCanvas
       int y = (int) ( (float) (sp.coord[1] - centre[1]) * scale) + halfheight;
       float z = sp.coord[1] - centre[2];
 
-      if (sp.sequence.getColor() == Color.black)
+      if (av.getSequenceColour(sp.sequence) == Color.black)
       {
         g.setColor(Color.white);
       }
       else
       {
-        g.setColor(sp.sequence.getColor());
+        g.setColor(av.getSequenceColour(sp.sequence));
       }
 
       if (av.getSelectionGroup() != null)
       {
-        if (av.getSelectionGroup().getSequences(false).contains( ( (SequencePoint) points.
+        if (av.getSelectionGroup().getSequences(null).contains( ( (SequencePoint) points.
             elementAt(i)).sequence))
         {
           g.setColor(Color.gray);
@@ -498,7 +498,7 @@ public class RotatableCanvas
       {
         av.getSelectionGroup().addOrRemove(found, true);
         av.getSelectionGroup().setEndRes(av.alignment.getWidth()-1);
-        PaintRefresher.Refresh(this, av.alignment);
+        PaintRefresher.Refresh(this, av.getSequenceSetId());
       }
       else
       {
@@ -577,7 +577,7 @@ public class RotatableCanvas
       {
         if (av != null)
         {
-          if (!av.getSelectionGroup().getSequences(false).contains(sp.sequence))
+          if (!av.getSelectionGroup().getSequences(null).contains(sp.sequence))
           {
             av.getSelectionGroup().addSequence(sp.sequence, true);
           }