X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FRotatableCanvas.java;h=a2463e87d7a44c80e61fb26a8f884c5f8c3cc2d1;hb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;hp=51b436f819422f011eba01d992b16523838e9fbb;hpb=ec955aa655d8320258b91eb079bc57f688cd0a07;p=jalview.git diff --git a/src/jalview/appletgui/RotatableCanvas.java b/src/jalview/appletgui/RotatableCanvas.java index 51b436f..a2463e8 100755 --- a/src/jalview/appletgui/RotatableCanvas.java +++ b/src/jalview/appletgui/RotatableCanvas.java @@ -1,23 +1,43 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer + * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + */ + package jalview.appletgui; -import jalview.math.*; -import jalview.datamodel.*; -import jalview.util.*; +import java.util.*; import java.awt.*; import java.awt.event.*; -import java.util.*; +import jalview.datamodel.*; +import jalview.math.*; +import jalview.util.*; -public class RotatableCanvas extends Panel implements MouseListener, - MouseMotionListener, - KeyListener - //RubberbandListener, - //SequenceSelectionListener +public class RotatableCanvas + extends Panel implements MouseListener, + MouseMotionListener, + KeyListener { - RotatableMatrix idmat = new RotatableMatrix(3,3); - RotatableMatrix objmat = new RotatableMatrix(3,3); - RotatableMatrix rotmat = new RotatableMatrix(3,3); + RotatableMatrix idmat = new RotatableMatrix(3, 3); + RotatableMatrix objmat = new RotatableMatrix(3, 3); + RotatableMatrix rotmat = new RotatableMatrix(3, 3); + String tooltip; + int toolx, tooly; //RubberbandRectangle rubberband; @@ -62,37 +82,53 @@ public class RotatableCanvas extends Panel implements MouseListener, float scalefactor = 1; AlignViewport av; -// Controller controller; + boolean showLabels = false; + public RotatableCanvas(AlignViewport av) + { + this.av = av; + } - public RotatableCanvas(AlignViewport av, - Vector points, int npoint) { + public void showLabels(boolean b) + { + showLabels = b; + repaint(); + } + + public void setPoints(Vector points, int npoint) + { this.points = points; this.npoint = npoint; - this.av = av; - PaintRefresher.Register(this); -// + PaintRefresher.Register(this, av.getSequenceSetId()); + prefsize = getPreferredSize(); orig = new float[npoint][3]; - for (int i=0; i < npoint; i++) { - SequencePoint sp = (SequencePoint)points.elementAt(i); - for (int j=0; j < 3; j++) { + for (int i = 0; i < npoint; i++) + { + SequencePoint sp = (SequencePoint) points.elementAt(i); + for (int j = 0; j < 3; j++) + { orig[i][j] = sp.coord[j]; } } //Initialize the matrices to identity - for (int i = 0; i < 3; i++) { - for (int j = 0; j < 3 ; j++) { - if (i != j) { - idmat.addElement(i,j,0); - objmat.addElement(i,j,0); - rotmat.addElement(i,j,0); - } else { - idmat.addElement(i,j,0); - objmat.addElement(i,j,0); - rotmat.addElement(i,j,0); + for (int i = 0; i < 3; i++) + { + for (int j = 0; j < 3; j++) + { + if (i != j) + { + idmat.addElement(i, j, 0); + objmat.addElement(i, j, 0); + rotmat.addElement(i, j, 0); + } + else + { + idmat.addElement(i, j, 0); + objmat.addElement(i, j, 0); + rotmat.addElement(i, j, 0); } } } @@ -109,59 +145,70 @@ public class RotatableCanvas extends Panel implements MouseListener, addMouseListener(this); addKeyListener(this); - // if (getParent() != null) { - // getParent().addKeyListener(this); + // if (getParent() != null) { + // getParent().addKeyListener(this); //} addMouseMotionListener(this); // Add rubberband - // rubberband = new RubberbandRectangle(this); - // rubberband.setActive(true); - // rubberband.addListener(this); + // rubberband = new RubberbandRectangle(this); + // rubberband.setActive(true); + // rubberband.addListener(this); } - /* public boolean handleSequenceSelectionEvent(SequenceSelectionEvent evt) { - redrawneeded = true; - repaint(); - return true; - } + /* public boolean handleSequenceSelectionEvent(SequenceSelectionEvent evt) { + redrawneeded = true; + repaint(); + return true; + } - public void removeNotify() { - controller.removeListener(this); - super.removeNotify(); - }*/ + public void removeNotify() { + controller.removeListener(this); + super.removeNotify(); + }*/ - public void initAxes() { - for (int i = 0; i < 3; i++) { - for (int j=0; j < 3; j++) { - if (i != j) { + public void initAxes() + { + for (int i = 0; i < 3; i++) + { + for (int j = 0; j < 3; j++) + { + if (i != j) + { axes[i][j] = 0; - } else { + } + else + { axes[i][j] = 1; } } } } - public void findWidth() { + public void findWidth() + { max = new float[3]; min = new float[3]; - max[0] = (float)-1e30; - max[1] = (float)-1e30; - max[2] = (float)-1e30; + max[0] = (float) - 1e30; + max[1] = (float) - 1e30; + max[2] = (float) - 1e30; - min[0] = (float)1e30; - min[1] = (float)1e30; - min[2] = (float)1e30; + min[0] = (float) 1e30; + min[1] = (float) 1e30; + min[2] = (float) 1e30; - for (int i = 0; i < 3; i++) { - for (int j = 0; j < npoint; j++) { - SequencePoint sp = (SequencePoint)points.elementAt(j); - if (sp.coord[i] >= max[i]) { + for (int i = 0; i < 3; i++) + { + for (int j = 0; j < npoint; j++) + { + SequencePoint sp = (SequencePoint) points.elementAt(j); + if (sp.coord[i] >= max[i]) + { max[i] = sp.coord[i]; } - if (sp.coord[i] <= min[i]) { + if (sp.coord[i] <= min[i]) + { min[i] = sp.coord[i]; } } @@ -178,186 +225,255 @@ public class RotatableCanvas extends Panel implements MouseListener, maxwidth = width[0]; if (width[1] > width[0]) + { maxwidth = width[1]; + } if (width[2] > width[1]) + { maxwidth = width[2]; + } //System.out.println("Maxwidth = " + maxwidth); } - public float findScale() { + public float findScale() + { int dim, width, height; - if (getSize().width != 0) { + if (getSize().width != 0) + { width = getSize().width; height = getSize().height; - } else { + } + else + { width = prefsize.width; height = prefsize.height; } - if (width < height) { + if (width < height) + { dim = width; - } else { + } + else + { dim = height; } - return (float)(dim*scalefactor/(2*maxwidth)); + return (float) (dim * scalefactor / (2 * maxwidth)); } - public void findCentre() { + public void findCentre() + { //Find centre coordinate findWidth(); - centre[0] = (max[0] + min[0])/2; - centre[1] = (max[1] + min[1])/2; - centre[2] = (max[2] + min[2])/2; + centre[0] = (max[0] + min[0]) / 2; + centre[1] = (max[1] + min[1]) / 2; + centre[2] = (max[2] + min[2]) / 2; // System.out.println("Centre x " + centre[0]); //System.out.println("Centre y " + centre[1]); //System.out.println("Centre z " + centre[2]); } - public Dimension getPreferredSize() { - if (prefsize != null) { + public Dimension getPreferredSize() + { + if (prefsize != null) + { return prefsize; - } else { - return new Dimension(400,400); + } + else + { + return new Dimension(400, 400); } } - public Dimension getMinimumSize() { + public Dimension getMinimumSize() + { return getPreferredSize(); } - public void paint(Graphics g) { - //Only create the image at the beginning - - if ((img == null) || (prefsize.width != getSize().width) || (prefsize.height != getSize().height)) { - prefsize.width = getSize().width; - prefsize.height = getSize().height; + public void update(Graphics g) + { + paint(g); + } + + public void paint(Graphics g) + { + if (points == null) + { + g.setFont(new Font("Verdana", Font.PLAIN, 18)); + g.drawString("Calculating PCA....", 20, getSize().height / 2); + } + else + { - scale = findScale(); + //Only create the image at the beginning - + if ( (img == null) || (prefsize.width != getSize().width) || + (prefsize.height != getSize().height)) + { + prefsize.width = getSize().width; + prefsize.height = getSize().height; - // System.out.println("New scale = " + scale); - img = createImage(getSize().width,getSize().height); - ig = img.getGraphics(); + scale = findScale(); - } + // System.out.println("New scale = " + scale); + img = createImage(getSize().width, getSize().height); + ig = img.getGraphics(); + } - drawBackground(ig,Color.black); + drawBackground(ig, Color.black); drawScene(ig); if (drawAxes == true) { drawAxes(ig); } + if (tooltip != null) + { + ig.setColor(Color.red); + ig.drawString(tooltip, toolx, tooly); + } - g.drawImage(img,0,0,this); + g.drawImage(img, 0, 0, this); + } } - public void drawAxes(Graphics g) { + public void drawAxes(Graphics g) + { g.setColor(Color.yellow); - for (int i=0; i < 3 ; i++) { - g.drawLine(getSize().width/2,getSize().height/2, - (int)(axes[i][0]*scale*max[0] + getSize().width/2), - (int)(axes[i][1]*scale*max[1] + getSize().height/2)); + for (int i = 0; i < 3; i++) + { + g.drawLine(getSize().width / 2, getSize().height / 2, + (int) (axes[i][0] * scale * max[0] + getSize().width / 2), + (int) (axes[i][1] * scale * max[1] + getSize().height / 2)); } } - public void drawBackground(Graphics g, Color col) { + public void drawBackground(Graphics g, Color col) + { g.setColor(col); - g.fillRect(0,0,prefsize.width,prefsize.height); + g.fillRect(0, 0, prefsize.width, prefsize.height); } + public void drawScene(Graphics g) + { + //boolean darker = false; - public void drawScene(Graphics g) { - boolean darker = false; - - int halfwidth = getSize().width/2; - int halfheight = getSize().height/2; + int halfwidth = getSize().width / 2; + int halfheight = getSize().height / 2; - for (int i = 0; i < npoint; i++) { - SequencePoint sp = (SequencePoint)points.elementAt(i); - int x = (int)((float)(sp.coord[0] - centre[0])*scale) + halfwidth; - int y = (int)((float)(sp.coord[1] - centre[1])*scale) + halfheight; + for (int i = 0; i < npoint; i++) + { + SequencePoint sp = (SequencePoint) points.elementAt(i); + int x = (int) ( (float) (sp.coord[0] - centre[0]) * scale) + halfwidth; + int y = (int) ( (float) (sp.coord[1] - centre[1]) * scale) + halfheight; float z = sp.coord[1] - centre[2]; - - - - if (sp.sequence.getColor() == Color.black) - g.setColor(Color.white); + if (av.getSequenceColour(sp.sequence) == Color.black) + { + g.setColor(Color.white); + } else - g.setColor(sp.sequence.getColor()); - + { + g.setColor(av.getSequenceColour(sp.sequence)); + } if (av.getSelectionGroup() != null) { - if (av.getSelectionGroup().sequences.contains(((SequencePoint)points.elementAt(i)).sequence)) + if (av.getSelectionGroup().getSequences(null).contains( ( ( + SequencePoint) points. + elementAt(i)).sequence)) + { g.setColor(Color.gray); + } } if (z < 0) + { g.setColor(g.getColor().darker()); + } - - g.fillRect(x-3,y-3,6,6); - g.setColor(Color.red); + g.fillRect(x - 3, y - 3, 6, 6); + if (showLabels) + { + g.setColor(Color.red); + g.drawString( ( (SequencePoint) points.elementAt(i)).sequence. + getName(), + x - 3, y - 4); + } } -// //Now the rectangle -// if (rectx2 != -1 && recty2 != -1) { -// g.setColor(Color.white); -// -// g.drawRect(rectx1,recty1,rectx2-rectx1,recty2-recty1); -// } } - public Dimension minimumsize() { + public Dimension minimumsize() + { return prefsize; } - public Dimension preferredsize() { + public Dimension preferredsize() + { return prefsize; } - public void keyTyped(KeyEvent evt) { } - public void keyReleased(KeyEvent evt) { } + public void keyTyped(KeyEvent evt) + {} - public void keyPressed(KeyEvent evt) { - requestFocus(); - if (evt.getKeyCode() == KeyEvent.VK_UP) { - scalefactor = (float)(scalefactor * 1.1); + public void keyReleased(KeyEvent evt) + {} + + public void keyPressed(KeyEvent evt) + { + if (evt.getKeyCode() == KeyEvent.VK_UP) + { + scalefactor = (float) (scalefactor * 1.1); scale = findScale(); - } else if (evt.getKeyCode() == KeyEvent.VK_DOWN) { - scalefactor = (float)(scalefactor * 0.9); + } + else if (evt.getKeyCode() == KeyEvent.VK_DOWN) + { + scalefactor = (float) (scalefactor * 0.9); scale = findScale(); - } else if (evt.getKeyChar() == 's') { - System.out.println("Rectangle selection"); - if (rectx2 != -1 && recty2 != -1) { - rectSelect(rectx1,recty1,rectx2,recty2); + } + else if (evt.getKeyChar() == 's') + { + System.err.println("DEBUG: Rectangle selection"); // log.debug + if (rectx2 != -1 && recty2 != -1) + { + rectSelect(rectx1, recty1, rectx2, recty2); } } repaint(); } - public void printPoints() { - for (int i=0; i < npoint; i++) { - SequencePoint sp = (SequencePoint)points.elementAt(i); - Format.print(System.out,"%5d ", i); - for (int j=0; j < 3;j++) { - Format.print(System.out,"%13.3f ",sp.coord[j]); + public void printPoints() + { + for (int i = 0; i < npoint; i++) + { + SequencePoint sp = (SequencePoint) points.elementAt(i); + Format.print(System.out, "%5d ", i); + for (int j = 0; j < 3; j++) + { + Format.print(System.out, "%13.3f ", sp.coord[j]); } System.out.println(); } } - public void mouseClicked(MouseEvent evt) { } - public void mouseEntered(MouseEvent evt) { } - public void mouseExited(MouseEvent evt) { } - public void mouseReleased(MouseEvent evt) { } + public void mouseClicked(MouseEvent evt) + {} + + public void mouseEntered(MouseEvent evt) + {} + + public void mouseExited(MouseEvent evt) + {} - public void mousePressed(MouseEvent evt) { + public void mouseReleased(MouseEvent evt) + {} + + public void mousePressed(MouseEvent evt) + { int x = evt.getX(); int y = evt.getY(); @@ -376,139 +492,131 @@ public class RotatableCanvas extends Panel implements MouseListener, rectx2 = -1; recty2 = -1; - SequenceI found = findPoint(x,y); + SequenceI found = findPoint(x, y); if (found != null) { if (av.getSelectionGroup() != null) { - av.getSelectionGroup().addOrRemove(found); - PaintRefresher.Refresh(this); + av.getSelectionGroup().addOrRemove(found, true); + av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1); + PaintRefresher.Refresh(this, av.getSequenceSetId()); } else { - av.setSelectionGroup(new SequenceGroup()); - av.getSelectionGroup().addOrRemove(found); - av.getSelectionGroup().setEndRes(av.alignment.getWidth()); + av.setSelectionGroup(new SequenceGroup()); + av.getSelectionGroup().addOrRemove(found, true); + av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1); } } repaint(); } - // private void fireSequenceSelectionEvent(Selection sel) { - // controller.handleSequenceSelectionEvent(new SequenceSelectionEvent(this,sel)); - //} - public void mouseMoved(MouseEvent evt) { - // SequenceI found = findPoint(evt.getX(), evt.getY()); + SequenceI found = findPoint(evt.getX(), evt.getY()); + if (found == null) + { + tooltip = null; + } + else + { + tooltip = found.getName(); + toolx = evt.getX(); + tooly = evt.getY(); + } + repaint(); } - public void mouseDragged(MouseEvent evt) { + public void mouseDragged(MouseEvent evt) + { mx = evt.getX(); my = evt.getY(); - //Check if this is a rectangle drawing drag - if ((evt.getModifiers() & InputEvent.BUTTON2_MASK) != 0) { -// rectx2 = evt.getX(); -// recty2 = evt.getY(); - } else { - rotmat.setIdentity(); - - rotmat.rotate((float)(my-omy),'x'); - rotmat.rotate((float)(mx-omx),'y'); - - for (int i = 0; i < npoint; i++) { - SequencePoint sp = (SequencePoint)points.elementAt(i); - sp.coord[0] -= centre[0]; - sp.coord[1] -= centre[1]; - sp.coord[2] -= centre[2]; - - //Now apply the rotation matrix - sp.coord= rotmat.vectorMultiply(sp.coord); - - //Now translate back again - sp.coord[0] += centre[0]; - sp.coord[1] += centre[1]; - sp.coord[2] += centre[2]; - } - for (int i=0; i < 3; i++) { - axes[i] = rotmat.vectorMultiply(axes[i]); - } - omx = mx; - omy = my; + rotmat.setIdentity(); - paint(this.getGraphics()); + rotmat.rotate( (float) (my - omy), 'x'); + rotmat.rotate( (float) (mx - omx), 'y'); + + for (int i = 0; i < npoint; i++) + { + SequencePoint sp = (SequencePoint) points.elementAt(i); + sp.coord[0] -= centre[0]; + sp.coord[1] -= centre[1]; + sp.coord[2] -= centre[2]; + + //Now apply the rotation matrix + sp.coord = rotmat.vectorMultiply(sp.coord); + + //Now translate back again + sp.coord[0] += centre[0]; + sp.coord[1] += centre[1]; + sp.coord[2] += centre[2]; } + for (int i = 0; i < 3; i++) + { + axes[i] = rotmat.vectorMultiply(axes[i]); + } + omx = mx; + omy = my; + + paint(this.getGraphics()); } - public void rectSelect(int x1, int y1, int x2, int y2) { - boolean changedSel = false; - for (int i=0; i < npoint; i++) { - SequencePoint sp = (SequencePoint)points.elementAt(i); - int tmp1 = (int)((sp.coord[0] - centre[0])*scale + (float)getSize().width/2.0); - int tmp2 = (int)((sp.coord[1] - centre[1])*scale + (float)getSize().height/2.0); + public void rectSelect(int x1, int y1, int x2, int y2) + { + //boolean changedSel = false; + for (int i = 0; i < npoint; i++) + { + SequencePoint sp = (SequencePoint) points.elementAt(i); + int tmp1 = (int) ( (sp.coord[0] - centre[0]) * scale + + (float) getSize().width / 2.0); + int tmp2 = (int) ( (sp.coord[1] - centre[1]) * scale + + (float) getSize().height / 2.0); - if (tmp1 > x1 && tmp1 < x2 && tmp2 > y1 && tmp2 < y2) { - if (av != null) { - if (!av.getSelectionGroup().sequences.contains(sp.sequence)) + if (tmp1 > x1 && tmp1 < x2 && tmp2 > y1 && tmp2 < y2) + { + if (av != null) + { + if (!av.getSelectionGroup().getSequences(null).contains(sp.sequence)) { - changedSel = true; - av.getSelectionGroup().addSequence(sp.sequence); + av.getSelectionGroup().addSequence(sp.sequence, true); } } } } - // if (changedSel) { - // fireSequenceSelectionEvent(av.getSelection()); - // } } - public SequenceI findPoint(int x, int y) { - int halfwidth = getSize().width/2; - int halfheight = getSize().height/2; + public SequenceI findPoint(int x, int y) + { - int found = -1; + int halfwidth = getSize().width / 2; + int halfheight = getSize().height / 2; - for (int i=0; i < npoint; i++) { + int found = -1; - SequencePoint sp = (SequencePoint)points.elementAt(i); - int px = (int)((float)(sp.coord[0] - centre[0])*scale) + halfwidth; - int py = (int)((float)(sp.coord[1] - centre[1])*scale) + halfheight; + for (int i = 0; i < npoint; i++) + { + SequencePoint sp = (SequencePoint) points.elementAt(i); + int px = (int) ( (float) (sp.coord[0] - centre[0]) * scale) + halfwidth; + int py = (int) ( (float) (sp.coord[1] - centre[1]) * scale) + halfheight; - if (Math.abs(px-x)<3 && Math.abs(py - y) < 3 ) { + if (Math.abs(px - x) < 3 && Math.abs(py - y) < 3) + { found = i; } } - if (found != -1) { - return ((SequencePoint)points.elementAt(found)).sequence; - } else { + if (found != -1) + { + return ( (SequencePoint) points.elementAt(found)).sequence; + } + else + { return null; } } -/* public boolean handleRubberbandEvent(RubberbandEvent evt) { - System.out.println("Rubberband handler called in RotatableCanvas with " + - evt.getBounds()); - - Rubberband rb = (Rubberband)evt.getSource(); - - // Clear the current selection (instance variable) - //if ((rb.getModifiers() & Event.SHIFT_MASK) == 0) { - // clearSelection(); - //} - - if (rb.getComponent() == this) { - Rectangle bounds = evt.getBounds(); - rectSelect(bounds.x,bounds.y,bounds.x+bounds.width,bounds.y+bounds.height); - } - - redrawneeded = true; - paint(this.getGraphics()); - - return true; - }*/ }