X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FRotatableCanvas.java;h=afb4e9546652fbf951abde5b38d1e1e23773f241;hb=252ddd218b716396b003b3fcbe0f8da499bde8c8;hp=5e90f0697aedddd75663aa788c37cf37c95344ed;hpb=2de8acfae59aced665e4c37ad0f7dcc2ed68818e;p=jalview.git diff --git a/src/jalview/appletgui/RotatableCanvas.java b/src/jalview/appletgui/RotatableCanvas.java index 5e90f06..afb4e95 100755 --- a/src/jalview/appletgui/RotatableCanvas.java +++ b/src/jalview/appletgui/RotatableCanvas.java @@ -1,34 +1,49 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1) - * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. + * This file is part of Jalview. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.appletgui; -import java.util.*; - -import java.awt.*; -import java.awt.event.*; - -import jalview.datamodel.*; -import jalview.math.*; -import jalview.util.*; +import jalview.api.RotatableCanvasI; +import jalview.datamodel.SequenceGroup; +import jalview.datamodel.SequenceI; +import jalview.datamodel.SequencePoint; +import jalview.math.RotatableMatrix; +import jalview.util.Format; +import jalview.util.MessageManager; +import jalview.viewmodel.AlignmentViewport; + +import java.awt.Color; +import java.awt.Dimension; +import java.awt.Font; +import java.awt.Graphics; +import java.awt.Image; +import java.awt.Panel; +import java.awt.event.KeyEvent; +import java.awt.event.KeyListener; +import java.awt.event.MouseEvent; +import java.awt.event.MouseListener; +import java.awt.event.MouseMotionListener; +import java.util.Vector; public class RotatableCanvas extends Panel implements MouseListener, - MouseMotionListener, KeyListener + MouseMotionListener, KeyListener, RotatableCanvasI { RotatableMatrix idmat = new RotatableMatrix(3, 3); @@ -96,11 +111,11 @@ public class RotatableCanvas extends Panel implements MouseListener, float scalefactor = 1; - AlignViewport av; + AlignmentViewport av; boolean showLabels = false; - public RotatableCanvas(AlignViewport av) + public RotatableCanvas(AlignmentViewport av) { this.av = av; } @@ -316,7 +331,9 @@ public class RotatableCanvas extends Panel implements MouseListener, if (points == null) { g.setFont(new Font("Verdana", Font.PLAIN, 18)); - g.drawString("Calculating PCA....", 20, getSize().height / 2); + g.drawString( + MessageManager.getString("label.calculating_pca") + "....", + 20, getSize().height / 2); } else { @@ -397,8 +414,8 @@ public class RotatableCanvas extends Panel implements MouseListener, if (av.getSelectionGroup() != null) { - if (av.getSelectionGroup().getSequences(null).contains( - ((SequencePoint) points.elementAt(i)).sequence)) + if (av.getSelectionGroup().getSequences(null) + .contains(((SequencePoint) points.elementAt(i)).sequence)) { g.setColor(Color.gray); } @@ -412,8 +429,9 @@ public class RotatableCanvas extends Panel implements MouseListener, if (showLabels) { g.setColor(Color.red); - g.drawString(((SequencePoint) points.elementAt(i)).sequence - .getName(), x - 3, y - 4); + g.drawString( + ((SequencePoint) points.elementAt(i)).sequence.getName(), + x - 3, y - 4); } } } @@ -514,19 +532,22 @@ public class RotatableCanvas extends Panel implements MouseListener, if (found != null) { + // TODO: applet PCA is not associatable with multi-panels - only parent + // view if (av.getSelectionGroup() != null) { av.getSelectionGroup().addOrRemove(found, true); - av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1); - PaintRefresher.Refresh(this, av.getSequenceSetId()); + av.getSelectionGroup().setEndRes(av.getAlignment().getWidth() - 1); } else { av.setSelectionGroup(new SequenceGroup()); av.getSelectionGroup().addOrRemove(found, true); - av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1); + av.getSelectionGroup().setEndRes(av.getAlignment().getWidth() - 1); } + PaintRefresher.Refresh(this, av.getSequenceSetId()); + av.sendSelection(); } repaint(); } @@ -589,15 +610,17 @@ public class RotatableCanvas extends Panel implements MouseListener, for (int i = 0; i < npoint; i++) { SequencePoint sp = (SequencePoint) points.elementAt(i); - int tmp1 = (int) ((sp.coord[0] - centre[0]) * scale + (float) getSize().width / 2.0); - int tmp2 = (int) ((sp.coord[1] - centre[1]) * scale + (float) getSize().height / 2.0); + int tmp1 = (int) ((sp.coord[0] - centre[0]) * scale + + (float) getSize().width / 2.0); + int tmp2 = (int) ((sp.coord[1] - centre[1]) * scale + + (float) getSize().height / 2.0); if (tmp1 > x1 && tmp1 < x2 && tmp2 > y1 && tmp2 < y2) { if (av != null) { - if (!av.getSelectionGroup().getSequences(null).contains( - sp.sequence)) + if (!av.getSelectionGroup().getSequences(null) + .contains(sp.sequence)) { av.getSelectionGroup().addSequence(sp.sequence, true); }