X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FRotatableCanvas.java;h=ce03ef08c451fa9029b6e16a46fae59c0fc9d3e3;hb=cf2e3cf08db12cd9b1ad97d2c2b7e97d9c126ce7;hp=4872aad153a7f8f51d0d168b3cebbfa629aa89f8;hpb=8a6fa9ea9900d0f106529c3f6283e7f9d76dd2cb;p=jalview.git

diff --git a/src/jalview/appletgui/RotatableCanvas.java b/src/jalview/appletgui/RotatableCanvas.java
index 4872aad..ce03ef0 100755
--- a/src/jalview/appletgui/RotatableCanvas.java
+++ b/src/jalview/appletgui/RotatableCanvas.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -514,19 +514,21 @@ public class RotatableCanvas extends Panel implements MouseListener,
 
     if (found != null)
     {
+      // TODO: applet PCA is not associatable with multi-panels - only parent view 
       if (av.getSelectionGroup() != null)
       {
         av.getSelectionGroup().addOrRemove(found, true);
-        av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1);
-        PaintRefresher.Refresh(this, av.getSequenceSetId());
+        av.getSelectionGroup().setEndRes(av.getAlignment().getWidth() - 1);
       }
       else
       {
         av.setSelectionGroup(new SequenceGroup());
         av.getSelectionGroup().addOrRemove(found, true);
-        av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1);
+        av.getSelectionGroup().setEndRes(av.getAlignment().getWidth() - 1);
 
       }
+      PaintRefresher.Refresh(this, av.getSequenceSetId());
+      av.sendSelection();
     }
     repaint();
   }