X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FRotatableCanvas.java;h=e8294ba5a1466360a6eae783efe23d55c0d9923a;hb=4ea6a00274e0a209a7dbec074f04a21ec1a80b28;hp=a722718032760fe7be7a1e0b70f3575411522de0;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git

diff --git a/src/jalview/appletgui/RotatableCanvas.java b/src/jalview/appletgui/RotatableCanvas.java
index a722718..e8294ba 100755
--- a/src/jalview/appletgui/RotatableCanvas.java
+++ b/src/jalview/appletgui/RotatableCanvas.java
@@ -1,13 +1,13 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -22,12 +22,13 @@ import java.util.*;
 import java.awt.*;
 import java.awt.event.*;
 
+import jalview.api.RotatableCanvasI;
 import jalview.datamodel.*;
 import jalview.math.*;
 import jalview.util.*;
 
 public class RotatableCanvas extends Panel implements MouseListener,
-        MouseMotionListener, KeyListener
+        MouseMotionListener, KeyListener, RotatableCanvasI
 {
   RotatableMatrix idmat = new RotatableMatrix(3, 3);
 
@@ -396,8 +397,8 @@ public class RotatableCanvas extends Panel implements MouseListener,
 
       if (av.getSelectionGroup() != null)
       {
-        if (av.getSelectionGroup().getSequences(null).contains(
-                ((SequencePoint) points.elementAt(i)).sequence))
+        if (av.getSelectionGroup().getSequences(null)
+                .contains(((SequencePoint) points.elementAt(i)).sequence))
         {
           g.setColor(Color.gray);
         }
@@ -411,8 +412,9 @@ public class RotatableCanvas extends Panel implements MouseListener,
       if (showLabels)
       {
         g.setColor(Color.red);
-        g.drawString(((SequencePoint) points.elementAt(i)).sequence
-                .getName(), x - 3, y - 4);
+        g.drawString(
+                ((SequencePoint) points.elementAt(i)).sequence.getName(),
+                x - 3, y - 4);
       }
     }
   }
@@ -513,19 +515,22 @@ public class RotatableCanvas extends Panel implements MouseListener,
 
     if (found != null)
     {
+      // TODO: applet PCA is not associatable with multi-panels - only parent
+      // view
       if (av.getSelectionGroup() != null)
       {
         av.getSelectionGroup().addOrRemove(found, true);
-        av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1);
-        PaintRefresher.Refresh(this, av.getSequenceSetId());
+        av.getSelectionGroup().setEndRes(av.getAlignment().getWidth() - 1);
       }
       else
       {
         av.setSelectionGroup(new SequenceGroup());
         av.getSelectionGroup().addOrRemove(found, true);
-        av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1);
+        av.getSelectionGroup().setEndRes(av.getAlignment().getWidth() - 1);
 
       }
+      PaintRefresher.Refresh(this, av.getSequenceSetId());
+      av.sendSelection();
     }
     repaint();
   }
@@ -595,8 +600,8 @@ public class RotatableCanvas extends Panel implements MouseListener,
       {
         if (av != null)
         {
-          if (!av.getSelectionGroup().getSequences(null).contains(
-                  sp.sequence))
+          if (!av.getSelectionGroup().getSequences(null)
+                  .contains(sp.sequence))
           {
             av.getSelectionGroup().addSequence(sp.sequence, true);
           }