X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FScalePanel.java;h=b65af2e843ff7b1827428e5124590f3761163b5c;hb=9317de4ce997ec39dee25ec507c12807c5067d7d;hp=bbbb92bdf0dfed01e19debf935d3d7a605a4ac69;hpb=a6789f8a91ca11fac840b958ee9207581ea4d14f;p=jalview.git

diff --git a/src/jalview/appletgui/ScalePanel.java b/src/jalview/appletgui/ScalePanel.java
index bbbb92b..b65af2e 100755
--- a/src/jalview/appletgui/ScalePanel.java
+++ b/src/jalview/appletgui/ScalePanel.java
@@ -142,7 +142,7 @@ public class ScalePanel extends Panel
       sg.setStartRes(min);
       sg.setEndRes(max);
     }
-    ap.paintAlignment(false);
+    ap.paintAlignment(false, false);
     av.sendSelection();
   }
 
@@ -168,7 +168,7 @@ public class ScalePanel extends Panel
         {
           av.showColumn(reveal[0]);
           reveal = null;
-          ap.paintAlignment(true);
+          ap.paintAlignment(true, true);
           av.sendSelection();
         }
       });
@@ -184,7 +184,7 @@ public class ScalePanel extends Panel
           {
             av.showAllHiddenColumns();
             reveal = null;
-            ap.paintAlignment(true);
+            ap.paintAlignment(true, true);
             av.sendSelection();
           }
         });
@@ -209,7 +209,7 @@ public class ScalePanel extends Panel
             av.setSelectionGroup(null);
           }
 
-          ap.paintAlignment(true);
+          ap.paintAlignment(true, true);
           av.sendSelection();
         }
       });
@@ -240,7 +240,7 @@ public class ScalePanel extends Panel
 
     if (!stretchingGroup)
     {
-      ap.paintAlignment(false);
+      ap.paintAlignment(false, false);
 
       return;
     }
@@ -257,7 +257,7 @@ public class ScalePanel extends Panel
     }
 
     stretchingGroup = false;
-    ap.paintAlignment(false);
+    ap.paintAlignment(false, false);
     av.sendSelection();
   }
 
@@ -286,7 +286,7 @@ public class ScalePanel extends Panel
     {
       stretchingGroup = true;
       cs.stretchGroup(res, sg, min, max);
-      ap.paintAlignment(false);
+      ap.paintAlignment(false, false);
     }
   }
 
@@ -438,7 +438,7 @@ public class ScalePanel extends Panel
       {
         int widthx = 1 + endx - startx;
         Iterator<Integer> it = hidden.getBoundedStartIterator(startx,
-                startx + widthx + 1, true);
+                startx + widthx + 1);
         while (it.hasNext())
         {
           res = it.next() - startx;