X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FScalePanel.java;h=c91449ffec53d7f3b34e1b48528361e32a959fe5;hb=d02383d48c137a8d2de0b0c36d96474dd0468113;hp=4e448882022c7080a828a6e1b1f6cf66b37447d0;hpb=af4abf989c69bbfaa30a25eff93133867bbce6c8;p=jalview.git

diff --git a/src/jalview/appletgui/ScalePanel.java b/src/jalview/appletgui/ScalePanel.java
index 4e44888..c91449f 100755
--- a/src/jalview/appletgui/ScalePanel.java
+++ b/src/jalview/appletgui/ScalePanel.java
@@ -87,7 +87,7 @@ public class ScalePanel extends Panel
 
     if (av.hasHiddenColumns())
     {
-      res = av.getAlignment().getHiddenColumns().adjustForHiddenColumns(x);
+      res = av.getAlignment().getHiddenColumns().visibleToAbsoluteColumn(x);
     }
     else
     {
@@ -235,7 +235,7 @@ public class ScalePanel extends Panel
     if (av.hasHiddenColumns())
     {
       res = av.getAlignment().getHiddenColumns()
-              .adjustForHiddenColumns(res);
+              .visibleToAbsoluteColumn(res);
     }
 
     if (!stretchingGroup)
@@ -276,7 +276,7 @@ public class ScalePanel extends Panel
     int res = (evt.getX() / av.getCharWidth())
             + av.getRanges().getStartRes();
     res = Math.max(0, res);
-    res = av.getAlignment().getHiddenColumns().adjustForHiddenColumns(res);
+    res = av.getAlignment().getHiddenColumns().visibleToAbsoluteColumn(res);
     res = Math.min(res, av.getAlignment().getWidth() - 1);
     min = Math.min(res, min);
     max = Math.max(res, max);
@@ -378,7 +378,7 @@ public class ScalePanel extends Panel
         {
           if (hidden.isVisible(sel))
           {
-            sel = hidden.findColumnPosition(sel);
+            sel = hidden.absoluteToVisibleColumn(sel);
           }
           else
           {
@@ -437,7 +437,7 @@ public class ScalePanel extends Panel
       if (av.getShowHiddenMarkers())
       {
         int widthx = 1 + endx - startx;
-        Iterator<Integer> it = hidden.getBoundedStartIterator(startx,
+        Iterator<Integer> it = hidden.getStartRegionIterator(startx,
                 startx + widthx + 1);
         while (it.hasNext())
         {