X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSeqCanvas.java;h=0df43221d887ea52b81726be920d580b8dfe54b2;hb=8b875ed4be8113683a34f4d4df36b3a6bb1c556e;hp=02c99902e6ff1204b65d14c2b4b96bdfeac49992;hpb=f441357783f32298b738d32d5c87000ac0e33768;p=jalview.git

diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java
index 02c9990..0df4322 100755
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -519,12 +519,12 @@ public class SeqCanvas
               }
 
               if ( (sx <= (endRes-startRes)*av.charWidth) &&
-                      group.sequences.contains(av.alignment.getSequenceAt(
+                      group.getSequences(false).contains(av.alignment.getSequenceAt(
                               i)))
               {
                 if ( (bottom == -1) &&
                     (i >= alHeight ||
-                     !group.sequences.contains(
+                     !group.getSequences(false).contains(
                          av.alignment.getSequenceAt(i + 1))))
                 {
                     bottom = sy + av.charHeight;
@@ -533,7 +533,7 @@ public class SeqCanvas
                   if (!inGroup)
                   {
                       if (((top == -1) && (i == 0)) ||
-                              !group.sequences.contains(
+                              !group.getSequences(false).contains(
                                   av.alignment.getSequenceAt(i - 1)))
                       {
                           top = sy;