X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSeqCanvas.java;h=0f8f930fff2365072442d6527263c2fa35a9903f;hb=35426f122a3db9e75360f2692c26a5452ec54460;hp=e947f7ab0a49bf80a21c75f800b7ab6b6d0b080e;hpb=5cd5b6e7864fe435ceb3f5c2f339a436ea0aac93;p=jalview.git

diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java
index e947f7a..0f8f930 100755
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -532,9 +532,9 @@ public class SeqCanvas
           {
             g1.setColor(Color.blue);
             g1.drawLine( (blockEnd - blockStart + 1) * av.charWidth - 1,
-                        startSeq + offset,
-                        (blockEnd - blockStart + 1) * av.charWidth - 1,
-                        startSeq + (endSeq - startSeq) * av.charHeight + offset);
+                         0 + offset,
+                         (blockEnd - blockStart + 1) * av.charWidth - 1,
+                         (endSeq - startSeq) * av.charHeight + offset);
           }
 
           g1.translate( -screenY * av.charWidth, 0);
@@ -629,7 +629,7 @@ public class SeqCanvas
      int ex = -1;
      int groupIndex = -1;
 
-     if ( (group == null) && (group.getSize(false) > 0))
+     if ( (group == null) && (av.alignment.getGroups().size() > 0))
      {
        group = (SequenceGroup) av.alignment.getGroups().elementAt(0);
        groupIndex = 0;