X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSeqCanvas.java;h=29616efbac3f4344d61f1f07d9359014bc385e2b;hb=efc31b4a8d5cee63555586804a2b79c06bdb5a14;hp=5aa5d663d84574664fbce7267aa40320dee8bebf;hpb=9257b8510c7354cbd7e43a3fc2817978cc8e4ae9;p=jalview.git

diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java
index 5aa5d66..29616ef 100755
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -374,7 +374,7 @@ public class SeqCanvas
       sr.drawSequence(g, nextSeq, av.alignment.findAllGroups(nextSeq), x1, x2,
                       (x1 - startx) * av.charWidth,
                       offset +
-                      AlignmentUtil.getPixelHeight(starty, i, av.charHeight),
+                      (i-starty)*av.charHeight,
                       av.charWidth, av.charHeight);
 
       if (av.showSequenceFeatures)
@@ -382,7 +382,7 @@ public class SeqCanvas
         fr.drawSequence(g, nextSeq, av.alignment.findAllGroups(nextSeq), x1, x2,
                         (x1 - startx) * av.charWidth,
                         offset +
-                        AlignmentUtil.getPixelHeight(starty, i, av.charHeight),
+                        (i-starty)*av.charHeight,
                         av.charWidth, av.charHeight);
       }
     }
@@ -413,7 +413,7 @@ public class SeqCanvas
         for (i = y1; i < y2; i++)
         {
           sx = (group.getStartRes() - startx) * av.charWidth;
-          sy = offset + AlignmentUtil.getPixelHeight(starty, i, av.charHeight);
+          sy = offset + (i-starty)*av.charHeight;
           ex = (group.getEndRes() + 1 - group.getStartRes()) * av.charWidth - 1;
 
           if (sx < getSize().width
@@ -484,7 +484,7 @@ public class SeqCanvas
             bottom = -1;
 
           }
-          sy = offset + AlignmentUtil.getPixelHeight(starty, i, av.charHeight);
+          sy = offset + (i-starty)*av.charHeight;
           g.drawLine(sx, oldY, sx, sy);
           g.drawLine(sx + ex, oldY, sx + ex, sy);
           inGroup = false;
@@ -531,9 +531,7 @@ public class SeqCanvas
                                   searchEnd,
                                   (searchStart - startx) * av.charWidth,
                                   offset +
-                                  AlignmentUtil.getPixelHeight(starty,
-              searchSeq,
-              av.charHeight),
+                                  (searchSeq-starty)*av.charHeight,
                                   av.charWidth,
                                   av.charHeight);
         }