X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSeqCanvas.java;h=9de545261cec93715152ed7c8e92860e1fa6e585;hb=b4d2b6a2ed131265ed599db27de9b82aaf010400;hp=867c367cf47f6f4feaddcda5368b5b96bae02f88;hpb=733b32eba6687bc7d4194c0d6d90a9efe7c5855e;p=jalview.git

diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java
index 867c367..9de5452 100755
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -21,6 +21,7 @@
 package jalview.appletgui;
 
 import jalview.datamodel.AlignmentI;
+import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
@@ -36,6 +37,7 @@ import java.awt.Graphics;
 import java.awt.Image;
 import java.awt.Panel;
 import java.beans.PropertyChangeEvent;
+import java.util.List;
 
 public class SeqCanvas extends Panel implements ViewportListenerI
 {
@@ -127,14 +129,17 @@ public class SeqCanvas extends Panel implements ViewportListenerI
     ypos += avcharHeight;
     if (av.hasHiddenColumns())
     {
-      startx = av.getColumnSelection().adjustForHiddenColumns(startx);
-      endx = av.getColumnSelection().adjustForHiddenColumns(endx);
+      startx = av.getAlignment().getHiddenColumns()
+              .adjustForHiddenColumns(startx);
+      endx = av.getAlignment().getHiddenColumns()
+              .adjustForHiddenColumns(endx);
     }
 
     int maxwidth = av.getAlignment().getWidth();
     if (av.hasHiddenColumns())
     {
-      maxwidth = av.getColumnSelection().findColumnPosition(maxwidth) - 1;
+      maxwidth = av.getAlignment().getHiddenColumns()
+              .findColumnPosition(maxwidth) - 1;
     }
 
     // WEST SCALE
@@ -174,7 +179,8 @@ public class SeqCanvas extends Panel implements ViewportListenerI
 
     if (av.hasHiddenColumns())
     {
-      endx = av.getColumnSelection().adjustForHiddenColumns(endx);
+      endx = av.getAlignment().getHiddenColumns()
+              .adjustForHiddenColumns(endx);
     }
 
     SequenceI seq;
@@ -414,6 +420,9 @@ public class SeqCanvas extends Panel implements ViewportListenerI
 
     FontMetrics fm = getFontMetrics(av.getFont());
 
+    LABEL_EAST = 0;
+    LABEL_WEST = 0;
+
     if (av.getScaleRightWrapped())
     {
       LABEL_EAST = fm.stringWidth(getMask());
@@ -435,16 +444,17 @@ public class SeqCanvas extends Panel implements ViewportListenerI
 
     av.setWrappedWidth(cWidth);
 
-    av.getRanges().setEndRes(av.getRanges().getStartRes() + cWidth - 1);
+    av.getRanges().setViewportStartAndWidth(startRes, cWidth);
 
     int endx;
     int ypos = hgap;
 
-    int maxwidth = av.getAlignment().getWidth() - 1;
+    int maxwidth = av.getAlignment().getWidth();
 
     if (av.hasHiddenColumns())
     {
-      maxwidth = av.getColumnSelection().findColumnPosition(maxwidth) - 1;
+      maxwidth = av.getAlignment().getHiddenColumns()
+              .findColumnPosition(maxwidth);
     }
 
     while ((ypos <= canvasHeight) && (startRes < maxwidth))
@@ -478,13 +488,13 @@ public class SeqCanvas extends Panel implements ViewportListenerI
       }
       if (av.hasHiddenColumns() && av.getShowHiddenMarkers())
       {
+        HiddenColumns hidden = av.getAlignment().getHiddenColumns();
         g.setColor(Color.blue);
         int res;
-        for (int i = 0; i < av.getColumnSelection().getHiddenColumns()
-                .size(); i++)
+        List<Integer> positions = hidden.findHiddenRegionPositions();
+        for (int pos : positions)
         {
-          res = av.getColumnSelection().findHiddenRegionPosition(i)
-                  - startRes;
+          res = pos - startRes;
 
           if (res < 0 || res > endx - startRes)
           {
@@ -562,7 +572,8 @@ public class SeqCanvas extends Panel implements ViewportListenerI
 
       if (av.hasHiddenColumns())
       {
-        for (int[] region : av.getColumnSelection().getHiddenColumns())
+        HiddenColumns hidden = av.getAlignment().getHiddenColumns();
+        for (int[] region : hidden.getHiddenColumnsCopy())
         {
           int hideStart = region[0];
           int hideEnd = region[1];
@@ -865,32 +876,44 @@ public class SeqCanvas extends Panel implements ViewportListenerI
   @Override
   public void propertyChange(PropertyChangeEvent evt)
   {
+    String eventName = evt.getPropertyName();
+
     if (!av.getWrapAlignment())
     {
-      if (evt.getPropertyName().equals("startres")
-              || evt.getPropertyName().equals("endres"))
+      int scrollX = 0;
+      if (eventName.equals(ViewportRanges.STARTRES))
       {
         // Make sure we're not trying to draw a panel
         // larger than the visible window
         ViewportRanges vpRanges = av.getRanges();
-        int scrollX = (int) evt.getNewValue() - (int) evt.getOldValue();
-        if (scrollX > vpRanges.getEndRes() - vpRanges.getStartRes())
+        scrollX = (int) evt.getNewValue() - (int) evt.getOldValue();
+        int range = vpRanges.getEndRes() - vpRanges.getStartRes();
+        if (scrollX > range)
         {
-          scrollX = vpRanges.getEndRes() - vpRanges.getStartRes();
+          scrollX = range;
         }
-        else if (scrollX < vpRanges.getStartRes() - vpRanges.getEndRes())
+        else if (scrollX < -range)
         {
-          scrollX = vpRanges.getStartRes() - vpRanges.getEndRes();
+          scrollX = -range;
         }
+      }
+
+      // Both scrolling and resizing change viewport ranges: scrolling changes
+      // both start and end points, but resize only changes end values.
+      // Here we only want to fastpaint on a scroll, with resize using a normal
+      // paint, so scroll events are identified as changes to the horizontal or
+      // vertical start value.
+      if (eventName.equals(ViewportRanges.STARTRES))
+      {
+        // scroll - startres and endres both change
         fastPaint(scrollX, 0);
       }
-      else if (evt.getPropertyName().equals("startseq")
-              || evt.getPropertyName().equals("endseq"))
+      else if (eventName.equals(ViewportRanges.STARTSEQ))
       {
+        // scroll
         fastPaint(0, (int) evt.getNewValue() - (int) evt.getOldValue());
       }
     }
-
   }
 
 }