X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSeqCanvas.java;h=f6ef5779f0e3433e508c8d38b14370e3301c15e9;hb=b01c4edc00dbeedd6b53777310d4232a4104a9ec;hp=465dd3864f67138994c37b6bda2b35101c62348a;hpb=225b4ceeafe280273cfe90c5a7d44d11c192498e;p=jalview.git

diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java
index 465dd38..f6ef577 100755
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -37,12 +37,13 @@ public class SeqCanvas
 
   SearchResults searchResults = null;
 
-  int chunkHeight;
-  int chunkWidth;
-
   boolean fastPaint = false;
 
 
+  int cursorX = 0;
+  int cursorY = 0;
+
+
   public SeqCanvas(AlignViewport av)
   {
     this.av = av;
@@ -468,6 +469,14 @@ public class SeqCanvas
                                 av.charWidth, av.charHeight);
        }
    }
+
+   if (av.cursorMode && cursorY == i
+       && cursorX >= startRes && cursorX <= endRes)
+   {
+     sr.drawCursor(nextSeq, cursorX, (cursorX - startRes) * av.charWidth,
+                   offset + ( (i - startSeq) * av.charHeight));
+   }
+
   }
 
   //