X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSeqCanvas.java;h=fe7abbbc13ef8436bb08867cf87c43dc152d4c5e;hb=182059d079ef2563d139ab1f0721c466cd648c02;hp=469dec951ae90d6aeb21c9a1bbaba4ed3a48701f;hpb=a41b74d63832baaf00daac0a176118dc751c3b24;p=jalview.git

diff --git a/src/jalview/appletgui/SeqCanvas.java b/src/jalview/appletgui/SeqCanvas.java
index 469dec9..fe7abbb 100755
--- a/src/jalview/appletgui/SeqCanvas.java
+++ b/src/jalview/appletgui/SeqCanvas.java
@@ -420,6 +420,9 @@ public class SeqCanvas extends Panel implements ViewportListenerI
 
     FontMetrics fm = getFontMetrics(av.getFont());
 
+    LABEL_EAST = 0;
+    LABEL_WEST = 0;
+
     if (av.getScaleRightWrapped())
     {
       LABEL_EAST = fm.stringWidth(getMask());
@@ -441,17 +444,17 @@ public class SeqCanvas extends Panel implements ViewportListenerI
 
     av.setWrappedWidth(cWidth);
 
-    av.getRanges().setEndRes(av.getRanges().getStartRes() + cWidth - 1);
+    av.getRanges().setViewportStartAndWidth(startRes, cWidth);
 
     int endx;
     int ypos = hgap;
 
-    int maxwidth = av.getAlignment().getWidth() - 1;
+    int maxwidth = av.getAlignment().getWidth();
 
     if (av.hasHiddenColumns())
     {
       maxwidth = av.getAlignment().getHiddenColumns()
-              .findColumnPosition(maxwidth) - 1;
+              .findColumnPosition(maxwidth);
     }
 
     while ((ypos <= canvasHeight) && (startRes < maxwidth))
@@ -552,8 +555,8 @@ public class SeqCanvas extends Panel implements ViewportListenerI
     return annotations.adjustPanelHeight();
   }
 
-  private void drawPanel(Graphics g1, int startRes, int endRes,
-          int startSeq, int endSeq, int offset)
+  private void drawPanel(Graphics g1, final int startRes, final int endRes,
+          final int startSeq, final int endSeq, final int offset)
   {
 
     if (!av.hasHiddenColumns())
@@ -562,8 +565,8 @@ public class SeqCanvas extends Panel implements ViewportListenerI
     }
     else
     {
-
       int screenY = 0;
+      final int screenYMax = endRes - startRes;
       int blockStart = startRes;
       int blockEnd = endRes;
 
@@ -581,13 +584,22 @@ public class SeqCanvas extends Panel implements ViewportListenerI
             continue;
           }
 
-          blockEnd = hideStart - 1;
+          /*
+           * draw up to just before the next hidden region, or the end of
+           * the visible region, whichever comes first
+           */
+          blockEnd = Math.min(hideStart - 1, blockStart + screenYMax
+                  - screenY);
 
           g1.translate(screenY * avcharWidth, 0);
 
           draw(g1, blockStart, blockEnd, startSeq, endSeq, offset);
 
-          if (av.getShowHiddenMarkers())
+          /*
+           * draw the downline of the hidden column marker (ScalePanel draws the
+           * triangle on top) if we reached it
+           */
+          if (av.getShowHiddenMarkers() && blockEnd == hideStart - 1)
           {
             g1.setColor(Color.blue);
             g1.drawLine((blockEnd - blockStart + 1) * avcharWidth - 1,
@@ -600,14 +612,14 @@ public class SeqCanvas extends Panel implements ViewportListenerI
           screenY += blockEnd - blockStart + 1;
           blockStart = hideEnd + 1;
 
-          if (screenY > (endRes - startRes))
+          if (screenY > screenYMax)
           {
             // already rendered last block
             return;
           }
         }
       }
-      if (screenY <= (endRes - startRes))
+      if (screenY <= screenYMax)
       {
         // remaining visible region to render
         blockEnd = blockStart + (endRes - startRes) - screenY;
@@ -884,13 +896,14 @@ public class SeqCanvas extends Panel implements ViewportListenerI
         // larger than the visible window
         ViewportRanges vpRanges = av.getRanges();
         scrollX = (int) evt.getNewValue() - (int) evt.getOldValue();
-        if (scrollX > vpRanges.getEndRes() - vpRanges.getStartRes())
+        int range = vpRanges.getEndRes() - vpRanges.getStartRes();
+        if (scrollX > range)
         {
-          scrollX = vpRanges.getEndRes() - vpRanges.getStartRes();
+          scrollX = range;
         }
-        else if (scrollX < vpRanges.getStartRes() - vpRanges.getEndRes())
+        else if (scrollX < -range)
         {
-          scrollX = vpRanges.getStartRes() - vpRanges.getEndRes();
+          scrollX = -range;
         }
       }