X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSeqPanel.java;fp=src%2Fjalview%2Fappletgui%2FSeqPanel.java;h=69a0dd002157a33ff5366f893d4ec2db299315d5;hb=b70c7ff4b002103401ccceb917114b954e18d50c;hp=ceae253a09ade0f771a123912b66acd0ee69bde3;hpb=04b25d01b22d71e2e4fbb62790b9761b3b9ca9c5;p=jalview.git

diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java
index ceae253..69a0dd0 100644
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -1878,7 +1878,8 @@ public class SeqPanel extends Panel implements MouseMotionListener,
         }
         else
         {
-          av.getColumnSelection().setElementsFrom(colsel);
+          av.getColumnSelection().setElementsFrom(colsel,
+                  av.getAlignment().getHiddenColumns());
         }
       }
       repaint |= av.isColSelChanged(true);