X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSeqPanel.java;h=a95dd273d068454e61aae551f50e95005eb2b191;hb=7d76e402efd4e04e179bc9bb264551bc2d3df936;hp=592fd4f402a68601b86474d697c4e36f80a4021c;hpb=5f090b7d1cb8836903474f8f4d5e475be142d30c;p=jalview.git

diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java
index 592fd4f..a95dd27 100644
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -817,18 +817,14 @@ public class SeqPanel extends Panel implements MouseMotionListener,
     {
       for (int i = 0; i < features.length; i++)
       {
-        if (av.featuresDisplayed == null
-                || !av.featuresDisplayed.containsKey(features[i].getType()))
+        if (av.getFeaturesDisplayed() == null
+                || !av.getFeaturesDisplayed().isVisible(features[i].getType()))
         {
           continue;
         }
 
         if (features[i].featureGroup != null
-                && seqCanvas.fr.featureGroups != null
-                && seqCanvas.fr.featureGroups
-                        .containsKey(features[i].featureGroup)
-                && !((Boolean) seqCanvas.fr.featureGroups
-                        .get(features[i].featureGroup)).booleanValue())
+                && !seqCanvas.fr.checkGroupVisibility(features[i].featureGroup,false))
         {
           continue;
         }