X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSeqPanel.java;h=b4fefec27b45a2eef3f0a0ef99e2eab0ee3a763a;hb=6781f0461eeaaf9bc285fc340ed897cab26524ad;hp=9870e68756f519e3e2c58bc43c7d93301946c7f2;hpb=2e87920be1283b0dfab1e0dd5bf4127493c96241;p=jalview.git

diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java
index 9870e68..b4fefec 100644
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -481,7 +481,7 @@ public class SeqPanel extends Panel implements MouseMotionListener,
          * Convert position in sequence (base 1) to sequence character array
          * index (base 0)
          */
-        int start = m.getStart() - 1;
+        int start = m.getStart() - m.getSequence().getStart();
         setStatusMessage(seq, start, sequenceIndex);
         return true;
       }