X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSequenceRenderer.java;fp=src%2Fjalview%2Fappletgui%2FSequenceRenderer.java;h=1c7c4ce85c32ad89ab7b32d6d2f562078a88a437;hb=b2b7e99113e1f0962140fc72d989cc826799a2d4;hp=4d9d37cf233515b92ecc7248d7ab35914e73b273;hpb=3e6ab0cb043dd49393bf8a9cb6d79098d5a6b6a5;p=jalview.git

diff --git a/src/jalview/appletgui/SequenceRenderer.java b/src/jalview/appletgui/SequenceRenderer.java
index 4d9d37c..1c7c4ce 100755
--- a/src/jalview/appletgui/SequenceRenderer.java
+++ b/src/jalview/appletgui/SequenceRenderer.java
@@ -23,7 +23,7 @@ package jalview.appletgui;
 import jalview.api.FeatureRenderer;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
-import jalview.schemes.CollectionColourSchemeI;
+import jalview.renderer.ResidueShaderI;
 
 import java.awt.Color;
 import java.awt.Font;
@@ -114,13 +114,11 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
     return col;
   }
 
-  void getBoxColour(CollectionColourSchemeI collectionColourSchemeI,
-          SequenceI seq, int i)
+  void getBoxColour(ResidueShaderI shader, SequenceI seq, int i)
   {
-    if (collectionColourSchemeI != null)
+    if (shader != null)
     {
-      resBoxColour = collectionColourSchemeI.findColour(seq.getCharAt(i),
-              i, seq);
+      resBoxColour = shader.findColour(seq.getCharAt(i), i, seq);
     }
     else if (forOverview
             && !jalview.util.Comparison.isGap(seq.getCharAt(i)))