X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSequenceRenderer.java;h=154bea4233300daa60daa757f684d0c83af54552;hb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;hp=044fcbe431a72bb1abe798668793be05e08d2046;hpb=a79f9e113c51c032070c670e45ce3eb464691166;p=jalview.git diff --git a/src/jalview/appletgui/SequenceRenderer.java b/src/jalview/appletgui/SequenceRenderer.java index 044fcbe..154bea4 100755 --- a/src/jalview/appletgui/SequenceRenderer.java +++ b/src/jalview/appletgui/SequenceRenderer.java @@ -1,19 +1,20 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) - * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1) + * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.appletgui; @@ -228,7 +229,8 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer { // cheat - use this if we have a consensus for each group: s = // getDisplayChar(currentSequenceGroup.getConsensus(), i, s, '.'); - s = getDisplayChar(av.getAlignmentConsensusAnnotation(), i, s, '.'); + s = getDisplayChar(av.getAlignmentConsensusAnnotation(), i, s, + '.'); } } else @@ -252,7 +254,8 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer } if (av.getShowUnconserved()) { - s = getDisplayChar(av.getAlignmentConsensusAnnotation(), i, s, '.'); + s = getDisplayChar(av.getAlignmentConsensusAnnotation(), i, s, + '.'); } }