X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSequenceRenderer.java;h=29e51c53289c53c8d604d249a28b88b2b89fccbd;hb=f6bde21f2fba3f12afedd6486bc8326a63f1373f;hp=e07fcb2abb37ea7bdfd0d8147f0cf68f45625803;hpb=ccaa79d427cd7ceeb7c367f3da00e3fcfe055498;p=jalview.git

diff --git a/src/jalview/appletgui/SequenceRenderer.java b/src/jalview/appletgui/SequenceRenderer.java
index e07fcb2..29e51c5 100755
--- a/src/jalview/appletgui/SequenceRenderer.java
+++ b/src/jalview/appletgui/SequenceRenderer.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -256,8 +256,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
         }
         if (currentSequenceGroup.getShowNonconserved())
         {
-          s = getDisplayChar(srep, i, s,
-                  '.');
+          s = getDisplayChar(srep, i, s, '.');
         }
       }
       else
@@ -281,8 +280,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
         }
         if (av.getShowUnconserved())
         {
-          s = getDisplayChar(srep, i, s,
-                  '.');
+          s = getDisplayChar(srep, i, s, '.');
 
         }
       }
@@ -314,13 +312,15 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer
 
   }
 
-  private char getDisplayChar(final boolean usesrep, int position,
-          char s, char c)
+  private char getDisplayChar(final boolean usesrep, int position, char s,
+          char c)
   {
     // TODO - use currentSequenceGroup rather than alignment
     // currentSequenceGroup.getConsensus()
-    char conschar = (usesrep) ? av.getAlignment().getSeqrep().getCharAt(position) : av.getAlignmentConsensusAnnotation().annotations[position].displayCharacter
-            .charAt(0);
+    char conschar = (usesrep) ? av.getAlignment().getSeqrep()
+            .getCharAt(position)
+            : av.getAlignmentConsensusAnnotation().annotations[position].displayCharacter
+                    .charAt(0);
     if (!jalview.util.Comparison.isGap(conschar) && s == conschar)
     {
       s = c;