X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSliderPanel.java;h=9154aa03bdf685982c7c2cab1fcc804ca11bf018;hb=6d6c9b65d01adbdd8b624bea6a766165e4497bb6;hp=3e6dbe6ce3ef6f038cbe140b880266c5b86dcb15;hpb=49665d43dbcc49a55d7d44fbf58a7c27ab0ae860;p=jalview.git

diff --git a/src/jalview/appletgui/SliderPanel.java b/src/jalview/appletgui/SliderPanel.java
index 3e6dbe6..9154aa0 100644
--- a/src/jalview/appletgui/SliderPanel.java
+++ b/src/jalview/appletgui/SliderPanel.java
@@ -21,7 +21,7 @@
 package jalview.appletgui;
 
 import jalview.datamodel.SequenceGroup;
-import jalview.schemes.ColourSchemeI;
+import jalview.renderer.ResidueShaderI;
 import jalview.util.MessageManager;
 
 import java.awt.BorderLayout;
@@ -49,38 +49,39 @@ import java.util.Iterator;
 public class SliderPanel extends Panel implements ActionListener,
         AdjustmentListener, MouseListener
 {
+  private static final String BACKGROUND = "Background";
+
   AlignmentPanel ap;
 
   boolean forConservation = true;
 
-  ColourSchemeI cs;
+  ResidueShaderI cs;
 
   static Frame conservationSlider;
 
   static Frame PIDSlider;
 
   public static int setConservationSlider(AlignmentPanel ap,
-          ColourSchemeI cs, String source)
+          ResidueShaderI ccs, String source)
   {
     SliderPanel sp = null;
 
     if (conservationSlider == null)
     {
-      sp = new SliderPanel(ap, cs.getConservationInc(), true, cs);
+      sp = new SliderPanel(ap, ccs.getConservationInc(), true, ccs);
       conservationSlider = new Frame();
       conservationSlider.add(sp);
     }
     else
     {
       sp = (SliderPanel) conservationSlider.getComponent(0);
-      sp.valueField.setText(String.valueOf(cs.getConservationInc()));
-      sp.cs = cs;
+      sp.cs = ccs;
+      sp.valueField.setText(String.valueOf(ccs.getConservationInc()));
     }
 
-    conservationSlider
-            .setTitle(MessageManager.formatMessage(
-                    "label.conservation_colour_increment",
-                    new String[] { source }));
+    conservationSlider.setTitle(MessageManager.formatMessage(
+            "label.conservation_colour_increment",
+            new String[] { source == null ? BACKGROUND : source }));
     if (ap.av.getAlignment().getGroups() != null)
     {
       sp.setAllGroupsCheckEnabled(true);
@@ -120,26 +121,25 @@ public class SliderPanel extends Panel implements ActionListener,
 
   }
 
-  public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs,
-          String source)
+  public static int setPIDSliderSource(AlignmentPanel ap,
+          ResidueShaderI ccs, String source)
   {
     SliderPanel pid = null;
     if (PIDSlider == null)
     {
-      pid = new SliderPanel(ap, cs.getThreshold(), false, cs);
+      pid = new SliderPanel(ap, ccs.getThreshold(), false, ccs);
       PIDSlider = new Frame();
       PIDSlider.add(pid);
     }
     else
     {
       pid = (SliderPanel) PIDSlider.getComponent(0);
-      pid.valueField.setText(String.valueOf(cs.getThreshold()));
-      pid.cs = cs;
+      pid.cs = ccs;
+      pid.valueField.setText(String.valueOf(ccs.getThreshold()));
     }
-    PIDSlider
-            .setTitle(MessageManager.formatMessage(
-                    "label.percentage_identity_threshold",
-                    new String[] { source }));
+    PIDSlider.setTitle(MessageManager.formatMessage(
+            "label.percentage_identity_threshold",
+            new String[] { source == null ? BACKGROUND : source }));
 
     if (ap.av.getAlignment().getGroups() != null)
     {
@@ -193,7 +193,7 @@ public class SliderPanel extends Panel implements ActionListener,
   }
 
   /**
-   * Hides the conservation slider panel if it is shown
+   * Hides the Conservation slider panel if it is shown
    */
   public static void hideConservationSlider()
   {
@@ -204,7 +204,7 @@ public class SliderPanel extends Panel implements ActionListener,
     }
   }
   public SliderPanel(AlignmentPanel ap, int value, boolean forConserve,
-          ColourSchemeI cs)
+          ResidueShaderI shader)
   {
     try
     {
@@ -214,7 +214,7 @@ public class SliderPanel extends Panel implements ActionListener,
       e.printStackTrace();
     }
     this.ap = ap;
-    this.cs = cs;
+    this.cs = shader;
     forConservation = forConserve;
     undoButton.setVisible(false);
     applyButton.setVisible(false);
@@ -249,7 +249,7 @@ public class SliderPanel extends Panel implements ActionListener,
       return;
     }
 
-    ColourSchemeI toChange = cs;
+    ResidueShaderI toChange = cs;
     Iterator<SequenceGroup> allGroups = null;
 
     if (allGroupsCheck.getState())