X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSliderPanel.java;h=dbc94e8d239dc6366854b6ffe413e66dc38b6bb8;hb=refs%2Fheads%2Fj2s%2Fdevelop-bh;hp=1bd5fd871da16653e7b36a9c53fe3f8b10d9236a;hpb=854fa199e6dd89266237dc803ddc88bf7ba5bdcc;p=jalview.git

diff --git a/src/jalview/appletgui/SliderPanel.java b/src/jalview/appletgui/SliderPanel.java
index 1bd5fd8..dbc94e8 100644
--- a/src/jalview/appletgui/SliderPanel.java
+++ b/src/jalview/appletgui/SliderPanel.java
@@ -1,32 +1,50 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.appletgui;
 
-import java.util.*;
-
-import java.awt.*;
-import java.awt.event.*;
-
-import jalview.datamodel.*;
-import jalview.schemes.*;
+import jalview.bin.JalviewLite;
+import jalview.datamodel.SequenceGroup;
+import jalview.schemes.ColourSchemeI;
 import jalview.util.MessageManager;
 
+import java.awt.BorderLayout;
+import awt2swing.Button;
+import awt2swing.Checkbox;
+import java.awt.Color;
+import java.awt.FlowLayout;
+import awt2swing.Frame;
+import awt2swing.Label;
+import awt2swing.Panel;
+import awt2swing.Scrollbar;
+import awt2swing.TextField;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.AdjustmentEvent;
+import java.awt.event.AdjustmentListener;
+import java.awt.event.MouseEvent;
+import java.awt.event.MouseListener;
+import java.awt.event.WindowAdapter;
+import java.awt.event.WindowEvent;
+import java.util.Iterator;
+
 public class SliderPanel extends Panel implements ActionListener,
         AdjustmentListener, MouseListener
 {
@@ -57,8 +75,7 @@ public class SliderPanel extends Panel implements ActionListener,
       sp.cs = cs;
     }
 
-    conservationSlider.setTitle("Conservation Colour Increment  (" + source
-            + ")");
+    conservationSlider.setTitle(MessageManager.formatMessage("label.conservation_colour_increment", new String[]{source}));
     if (ap.av.getAlignment().getGroups() != null)
     {
       sp.setAllGroupsCheckEnabled(true);
@@ -83,7 +100,7 @@ public class SliderPanel extends Panel implements ActionListener,
 
     if (!conservationSlider.isVisible())
     {
-      jalview.bin.JalviewLite.addFrame(conservationSlider,
+      JalviewLite.addFrame(conservationSlider,
               conservationSlider.getTitle(), 420, 100);
       conservationSlider.addWindowListener(new WindowAdapter()
       {
@@ -112,7 +129,7 @@ public class SliderPanel extends Panel implements ActionListener,
       pid = (SliderPanel) PIDSlider.getComponent(0);
       pid.cs = cs;
     }
-    PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")");
+    PIDSlider.setTitle(MessageManager.formatMessage("label.percentage_identity_thereshold", new String[]{source}));
 
     if (ap.av.getAlignment().getGroups() != null)
     {
@@ -139,7 +156,7 @@ public class SliderPanel extends Panel implements ActionListener,
 
     if (!PIDSlider.isVisible())
     {
-      jalview.bin.JalviewLite.addFrame(PIDSlider, PIDSlider.getTitle(),
+      JalviewLite.addFrame(PIDSlider, PIDSlider.getTitle(),
               420, 100);
       PIDSlider.addWindowListener(new WindowAdapter()
       {
@@ -169,14 +186,16 @@ public class SliderPanel extends Panel implements ActionListener,
     applyButton.setVisible(false);
     if (forConservation)
     {
-      label.setText(MessageManager.getString("label.modify_conservation_visibility"));
+      label.setText(MessageManager
+              .getString("label.modify_conservation_visibility"));
       slider.setMinimum(0);
       slider.setMaximum(50 + slider.getVisibleAmount());
       slider.setUnitIncrement(1);
     }
     else
     {
-      label.setText(MessageManager.getString("label.colour_residues_above_occurence"));
+      label.setText(MessageManager
+              .getString("label.colour_residues_above_occurence"));
       slider.setMinimum(0);
       slider.setMaximum(100 + slider.getVisibleAmount());
       slider.setBlockIncrement(1);
@@ -212,13 +231,15 @@ public class SliderPanel extends Panel implements ActionListener,
       }
       else
       {
-        toChange.setThreshold(i, ap.av.getIgnoreGapsConsensus());
+        toChange.setThreshold(i, ap.av.isIgnoreGapsConsensus());
       }
       if (allGroups != null && allGroups.hasNext())
       {
         while ((toChange = allGroups.next().cs) == null
                 && allGroups.hasNext())
+        {
           ;
+        }
       }
       else
       {
@@ -316,7 +337,7 @@ public class SliderPanel extends Panel implements ActionListener,
     slider.setOrientation(0);
     valueField.setFont(new java.awt.Font("Verdana", 0, 11));
     valueField.setText("   ");
-    valueField.addActionListener(this); 
+    valueField.addActionListener(this);
     valueField.setColumns(3);
     label.setFont(new java.awt.Font("Verdana", 0, 11));
     label.setText(MessageManager.getString("label.set_this_label_text"));
@@ -331,8 +352,10 @@ public class SliderPanel extends Panel implements ActionListener,
     undoButton.addActionListener(this);
     allGroupsCheck.setEnabled(false);
     allGroupsCheck.setFont(new java.awt.Font("Verdana", 0, 11));
-    allGroupsCheck.setLabel(MessageManager.getString("action.apply_threshold_all_groups"));
-    allGroupsCheck.setName(MessageManager.getString("action.apply_all_groups"));
+    allGroupsCheck.setLabel(MessageManager
+            .getString("action.apply_threshold_all_groups"));
+    allGroupsCheck.setName(MessageManager
+            .getString("action.apply_all_groups"));
     this.setBackground(Color.white);
     this.setForeground(Color.black);
     jPanel2.add(label, null);