X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FSplitFrame.java;h=59b66c6fddd5cba879f4d05ef75f0e6ae895033d;hb=c640b1c17cbfbc41723b0441f049cd416267dcc3;hp=cdd1605e3798a825724bd19403994b8337c220ec;hpb=07bb0da70ad46444f5f9bc0b2fa80e9ee3805394;p=jalview.git

diff --git a/src/jalview/appletgui/SplitFrame.java b/src/jalview/appletgui/SplitFrame.java
index cdd1605..59b66c6 100644
--- a/src/jalview/appletgui/SplitFrame.java
+++ b/src/jalview/appletgui/SplitFrame.java
@@ -1,16 +1,17 @@
 package jalview.appletgui;
 
+import java.awt.BorderLayout;
+import java.awt.Dimension;
+import java.awt.GridLayout;
+import java.awt.Panel;
+
 import jalview.analysis.AlignmentUtils;
+import jalview.api.AlignmentViewPanel;
 import jalview.api.ViewStyleI;
 import jalview.bin.JalviewLite;
 import jalview.datamodel.AlignmentI;
 import jalview.structure.StructureSelectionManager;
 
-import java.awt.BorderLayout;
-import java.awt.Dimension;
-import java.awt.GridLayout;
-import java.awt.Panel;
-
 public class SplitFrame extends EmbmenuFrame
 {
   private static final long serialVersionUID = 1L;
@@ -65,6 +66,14 @@ public class SplitFrame extends EmbmenuFrame
       ssm.addCommandListener(protein);
     }
 
+    /*
+     * Now mappings exist, can compute cDNA consensus on protein alignment
+     */
+    protein.initComplementConsensus();
+    AlignmentViewPanel ap = topAlignment.isNucleotide() ? bottomFrame.alignPanel
+            : topFrame.alignPanel;
+    protein.updateConsensus(ap);
+
     adjustLayout();
   }
 
@@ -178,9 +187,9 @@ public class SplitFrame extends EmbmenuFrame
     else
     {
       this.add(outermost);
-      int width = Math.max(topFrame.DEFAULT_WIDTH,
-              bottomFrame.DEFAULT_WIDTH);
-      int height = topFrame.DEFAULT_HEIGHT + bottomFrame.DEFAULT_HEIGHT;
+      int width = Math.max(topFrame.frameWidth,
+              bottomFrame.frameWidth);
+      int height = topFrame.frameHeight + bottomFrame.frameHeight;
       jalview.bin.JalviewLite
               .addFrame(this, this.getTitle(), width, height);
     }