X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FTreeCanvas.java;h=075d8cb9c8121975ae5329158cc4731c31d81489;hb=0a7759c8326205c9d6c214f05c93c6864b57023c;hp=a6bc5dfb936ca339d322d599e7682bed78a0b490;hpb=95a46891288f4fc63d690cab4f56879678f54fb6;p=jalview.git

diff --git a/src/jalview/appletgui/TreeCanvas.java b/src/jalview/appletgui/TreeCanvas.java
index a6bc5df..075d8cb 100755
--- a/src/jalview/appletgui/TreeCanvas.java
+++ b/src/jalview/appletgui/TreeCanvas.java
@@ -82,10 +82,9 @@ public class TreeCanvas
       av.setSelectionGroup(selected);
     }
 
-    selected.setEndRes(av.alignment.getWidth());
+    selected.setEndRes(av.alignment.getWidth()-1);
     selected.addOrRemove(sequence, true);
 
-System.out.println("called here");
     PaintRefresher.Refresh(this, av.alignment);
     repaint();
   }
@@ -487,11 +486,12 @@ System.out.println("called here");
 
           SequenceGroup sg = new SequenceGroup(sequences, "TreeGroup",
                                                cs, true, true,
-                                               false, 0, av.alignment.getWidth());
+                                               false, 0, av.alignment.getWidth()-1);
 
 
-          if (av.getGlobalColourScheme().conservationApplied())
-          {
+          if (  av.getGlobalColourScheme()!=null
+             && av.getGlobalColourScheme().conservationApplied())
+            {
             Conservation c = new Conservation("Group",
                                               ResidueProperties.propHash, 3,
                                               sg.sequences, sg.getStartRes(),