X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FTreeCanvas.java;h=e30879cb8efef0e90fe3238fa6a7026288abfaa2;hb=bc096ecbcd3cf4bbf17a24f9e9df88806789d688;hp=510df943d22a9100d85443f2397e88267b8912f0;hpb=8e1be43e250107a4d86898bd554cf03098fa5957;p=jalview.git

diff --git a/src/jalview/appletgui/TreeCanvas.java b/src/jalview/appletgui/TreeCanvas.java
index 510df94..e30879c 100755
--- a/src/jalview/appletgui/TreeCanvas.java
+++ b/src/jalview/appletgui/TreeCanvas.java
@@ -672,13 +672,13 @@ public class TreeCanvas extends Panel implements MouseListener,
       // instead we set it manually - recalc called after updateAnnotation
       sg.setColourScheme(cs);
       sg.getGroupColourScheme().setThreshold(
-              av.getViewportColourScheme().getThreshold(),
+              av.getResidueShading().getThreshold(),
               av.isIgnoreGapsConsensus());
 
       sg.setName("JTreeGroup:" + sg.hashCode());
       sg.setIdColour(col);
       if (av.getGlobalColourScheme() != null
-              && av.getViewportColourScheme().conservationApplied())
+              && av.getResidueShading().conservationApplied())
       {
         Conservation c = new Conservation("Group", sg.getSequences(null),
                 sg.getStartRes(), sg.getEndRes());