X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FUserDefinedColours.java;h=342c065261eeb7ca1280c7d8739a0ad8fd5200ee;hb=828bb8cde756e18e25ffae5ac47bf6832d32eeda;hp=225cfc79b7d6237e140439fa45e6876ea8705c9a;hpb=2f4f1d8fb6878271b64f327bc58c895f458137af;p=jalview.git

diff --git a/src/jalview/appletgui/UserDefinedColours.java b/src/jalview/appletgui/UserDefinedColours.java
index 225cfc7..342c065 100644
--- a/src/jalview/appletgui/UserDefinedColours.java
+++ b/src/jalview/appletgui/UserDefinedColours.java
@@ -1,19 +1,21 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.appletgui;
@@ -185,7 +187,7 @@ public class UserDefinedColours extends Panel implements ActionListener,
     setTargetColour(colour);
 
     okcancelPanel.setBounds(new Rectangle(0, 113, 400, 35));
-    frame.setTitle("User Defined Colours - " + label);
+    frame.setTitle(MessageManager.getString("label.user_defined_colours") + " - " + label);
     frame.setSize(420, 200);
   }
 
@@ -204,7 +206,7 @@ public class UserDefinedColours extends Panel implements ActionListener,
       // // not 1.1 compatible!
       // dialog = new Dialog(((JVDialog)alignframe), title, true);
       // } else {
-      throw new Error("Unsupported owner for User Colour scheme dialog.");
+      throw new Error(MessageManager.getString("label.error_unsupported_owwner_user_colour_scheme"));
     }
 
     dialog.add(this);
@@ -276,7 +278,8 @@ public class UserDefinedColours extends Panel implements ActionListener,
     }
     frame = new Frame();
     frame.add(this);
-    jalview.bin.JalviewLite.addFrame(frame, MessageManager.getString("label.user_defined_colours"), 420,
+    jalview.bin.JalviewLite.addFrame(frame,
+            MessageManager.getString("label.user_defined_colours"), 420,
             345);
 
     if (seqGroup != null)
@@ -424,7 +427,9 @@ public class UserDefinedColours extends Panel implements ActionListener,
   {
     applyButton_actionPerformed();
     if (dialog != null)
+    {
       dialog.setVisible(false);
+    }
 
     frame.setVisible(false);
   }
@@ -486,7 +491,7 @@ public class UserDefinedColours extends Panel implements ActionListener,
     UserColourScheme ucs = new UserColourScheme(newColours);
     if (ap != null)
     {
-      ucs.setThreshold(0, ap.av.getIgnoreGapsConsensus());
+      ucs.setThreshold(0, ap.av.isIgnoreGapsConsensus());
     }
 
     if (ap != null)
@@ -554,7 +559,9 @@ public class UserDefinedColours extends Panel implements ActionListener,
         }
       }
       if (dialog != null)
+      {
         dialog.setVisible(false);
+      }
 
       frame.setVisible(false);
       return;