X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FUserDefinedColours.java;h=6e14146846376e4fdc85cc50a6316bcb5850c33a;hb=952ae154954fe87b94cccb765d32718689b9e9a0;hp=6544993bf8a858f982289f7536651bace4ecad76;hpb=a4c90a2c3a3b977a542250e2cfdfb0d8b247d4aa;p=jalview.git

diff --git a/src/jalview/appletgui/UserDefinedColours.java b/src/jalview/appletgui/UserDefinedColours.java
index 6544993..6e14146 100755
--- a/src/jalview/appletgui/UserDefinedColours.java
+++ b/src/jalview/appletgui/UserDefinedColours.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -38,9 +38,12 @@ public class UserDefinedColours
   ColourSchemeI oldColourScheme;
   Frame frame;
   MCview.AppletPDBCanvas pdbcanvas;
-  FeatureSettings featureSettings;
-  String feature;
-  Color originalFeatureCol;
+  AppletJmol jmol;
+
+  Dialog dialog;
+  Object caller;
+  String originalLabel;
+  Color originalColour;
 
   int R = 0, G = 0, B = 0;
 
@@ -73,47 +76,116 @@ public class UserDefinedColours
     init();
   }
 
-  public UserDefinedColours(FeatureSettings featureSettings,
-                            String feature,
-                            Color col)
+  public UserDefinedColours(AppletJmol jmol)
   {
-    this.featureSettings = featureSettings;
-    this.feature = feature;
+    this.jmol = jmol;
+    init();
+  }
+
+  public UserDefinedColours(FeatureRenderer fr, Frame alignframe)
+  {
+    caller = fr;
+    originalColour = fr.colourPanel.getBackground();
+    originalLabel = "Feature Colour";
+    setForDialog("Select Feature Colour", alignframe);
+    setTargetColour(fr.colourPanel.getBackground());
+    dialog.setVisible(true);
+  }
+
+  public UserDefinedColours(Component caller,
+                            Color col1,
+                            Frame alignframe)
+  {
+    this.caller = caller;
+    originalColour = col1;
+    originalLabel = "Select Colour";
+    setForDialog("Select Colour", alignframe);
+    setTargetColour(col1);
+    dialog.setVisible(true);
+  }
+
+
+  public UserDefinedColours(Object caller,
+                            String label,
+                            Color colour)
+  {
+    this.caller = caller;
+    originalColour = colour;
+    originalLabel = label;
     init();
     remove(buttonPanel);
-    originalFeatureCol = col;
-    setTargetColour(col);
+
+    setTargetColour(colour);
 
     okcancelPanel.setBounds(new Rectangle(0, 113, 400, 35));
-    frame.setTitle("User Defined Colours - "+feature);
+    frame.setTitle("User Defined Colours - " + label);
     frame.setSize(420, 200);
   }
 
+  void setForDialog(String title, Frame alignframe)
+  {
+    init();
+    frame.setVisible(false);
+    remove(buttonPanel);
+    dialog = new Dialog(alignframe, title, true);
+
+    dialog.add(this);
+    this.setSize(400,123);
+    okcancelPanel.setBounds(new Rectangle(0, 123, 400, 35));
+    int height = 160 + alignframe.getInsets().top + getInsets().bottom;
+    int width = 400;
+
+    dialog.setBounds(alignframe.getBounds().x
+              + (alignframe.getSize().width - width) / 2,
+              alignframe.getBounds().y
+              + (alignframe.getSize().height - height) / 2,
+              width, height);
+
+  }
+
   public void actionPerformed(ActionEvent evt)
   {
-    if(evt.getSource()==okButton)
-     okButton_actionPerformed();
-   else if(evt.getSource()==applyButton)
+    if (evt.getSource() == okButton)
+    {
+      okButton_actionPerformed();
+    }
+    else if (evt.getSource() == applyButton)
+    {
       applyButton_actionPerformed();
-   else if(evt.getSource()==cancelButton)
-     cancelButton_actionPerformed();
-   else if(evt.getSource()==rText)
-     rText_actionPerformed();
-   else if (evt.getSource() == gText)
-     gText_actionPerformed();
-   else if (evt.getSource() == bText)
-     bText_actionPerformed();
-}
+    }
+    else if (evt.getSource() == cancelButton)
+    {
+      cancelButton_actionPerformed();
+    }
+    else if (evt.getSource() == rText)
+    {
+      rText_actionPerformed();
+    }
+    else if (evt.getSource() == gText)
+    {
+      gText_actionPerformed();
+    }
+    else if (evt.getSource() == bText)
+    {
+      bText_actionPerformed();
+    }
+  }
 
   public void adjustmentValueChanged(AdjustmentEvent evt)
   {
-    if(evt.getSource()==rScroller)
-    rScroller_adjustmentValueChanged();
-  else if(evt.getSource()==gScroller)
-    gScroller_adjustmentValueChanged();
-  else if(evt.getSource()==bScroller)
-    bScroller_adjustmentValueChanged();
-}
+    if (evt.getSource() == rScroller)
+    {
+      rScroller_adjustmentValueChanged();
+    }
+    else if (evt.getSource() == gScroller)
+    {
+      gScroller_adjustmentValueChanged();
+    }
+    else if (evt.getSource() == bScroller)
+    {
+      bScroller_adjustmentValueChanged();
+    }
+  }
 
   void init()
   {
@@ -147,6 +219,7 @@ public class UserDefinedColours
 
     validate();
   }
+
   protected void rText_actionPerformed()
   {
     try
@@ -224,6 +297,7 @@ public class UserDefinedColours
     R = col.getRed();
     G = col.getGreen();
     B = col.getBlue();
+
     rScroller.setValue(R);
     gScroller.setValue(G);
     bScroller.setValue(B);
@@ -246,7 +320,7 @@ public class UserDefinedColours
 
     try
     {
-      col = oldColourScheme.findColour(aa, -1);
+      col = oldColourScheme.findColour(aa.charAt(0), -1);
     }
     catch (Exception ex)
     {}
@@ -270,14 +344,44 @@ public class UserDefinedColours
   protected void okButton_actionPerformed()
   {
     applyButton_actionPerformed();
+    if (dialog != null)
+      dialog.setVisible(false);
+
     frame.setVisible(false);
   }
 
+  public Color getColor()
+  {
+    return new Color(R, G, B);
+  }
+
   protected void applyButton_actionPerformed()
   {
-    if (featureSettings != null)
+    if (caller != null)
     {
-      featureSettings.setUserColour(feature, new Color(R,G,B));
+      if (caller instanceof FeatureSettings)
+      {
+        ( (FeatureSettings) caller).setUserColour
+            (originalLabel, getColor());
+      }
+      else if (caller instanceof AnnotationColourChooser)
+      {
+        if (originalLabel.equals("Min Colour"))
+        {
+          ( (AnnotationColourChooser) caller).minColour_actionPerformed
+              (getColor());
+        }
+        else
+        {
+          ( (AnnotationColourChooser) caller).maxColour_actionPerformed
+              (getColor());
+        }
+      }
+      else if(caller instanceof FeatureRenderer)
+      {
+        ((FeatureRenderer)caller).colourPanel.setBackground(getColor());
+      }
+
       return;
     }
 
@@ -289,10 +393,12 @@ public class UserDefinedColours
     }
 
     UserColourScheme ucs = new UserColourScheme(newColours);
-    if(ap!=null)
+    if (ap != null)
+    {
       ucs.setThreshold(0, ap.av.getIgnoreGapsConsensus());
+    }
 
-    if(ap!=null)
+    if (ap != null)
     {
       if (seqGroup != null)
       {
@@ -303,21 +409,49 @@ public class UserDefinedColours
         ap.av.setGlobalColourScheme(ucs);
       }
       ap.seqPanel.seqCanvas.img = null;
-      ap.repaint();
+      ap.paintAlignment(true);
     }
-    else if(pdbcanvas!=null)
+    else if(jmol!=null)
     {
-      pdbcanvas.pdb.setColours(ucs);
-      pdbcanvas.updateSeqColours();
+      jmol.setJalviewColourScheme(ucs);
+    }
+    else if (pdbcanvas != null)
+    {
+      pdbcanvas.setColours(ucs);
     }
   }
 
-
   protected void cancelButton_actionPerformed()
   {
-    if(featureSettings!=null)
+    if (caller != null)
     {
-      featureSettings.setUserColour(feature, originalFeatureCol);
+      if (caller instanceof FeatureSettings)
+      {
+        ( (FeatureSettings) caller).setUserColour
+            (originalLabel, originalColour);
+      }
+      else if (caller instanceof AnnotationColourChooser)
+      {
+        if (originalLabel.equals("Min Colour"))
+        {
+          ( (AnnotationColourChooser) caller).minColour_actionPerformed
+              (originalColour);
+        }
+        else
+        {
+          ( (AnnotationColourChooser) caller).maxColour_actionPerformed
+              (originalColour);
+        }
+      }
+      else if (caller instanceof FeatureRenderer)
+      {
+        ( (FeatureRenderer) caller).colourPanel.setBackground(originalColour);
+
+      }
+
+      if(dialog!=null)
+        dialog.setVisible(false);
+
       frame.setVisible(false);
       return;
     }
@@ -331,7 +465,7 @@ public class UserDefinedColours
 
     UserColourScheme ucs = new UserColourScheme(newColours);
 
-   if(ap!=null)
+    if (ap != null)
     {
       if (seqGroup != null)
       {
@@ -341,9 +475,13 @@ public class UserDefinedColours
       {
         ap.av.setGlobalColourScheme(ucs);
       }
-      ap.repaint();
+      ap.paintAlignment(true);
+    }
+    else if(jmol !=null)
+    {
+      jmol.setJalviewColourScheme(ucs);
     }
-    else if(pdbcanvas!=null)
+    else if (pdbcanvas != null)
     {
       pdbcanvas.pdb.setColours(ucs);
     }
@@ -351,7 +489,6 @@ public class UserDefinedColours
     frame.setVisible(false);
   }
 
-
   protected Panel buttonPanel = new Panel();
   protected GridLayout gridLayout = new GridLayout();
   Panel okcancelPanel = new Panel();
@@ -369,82 +506,84 @@ public class UserDefinedColours
   protected TextField bText = new TextField();
   protected Panel target = new Panel();
 
-  private void jbInit() throws Exception {
-      this.setLayout(null);
-      buttonPanel.setLayout(gridLayout);
-      gridLayout.setColumns(6);
-      gridLayout.setRows(4);
-      okButton.setFont(new java.awt.Font("Verdana", 0, 11));
-      okButton.setLabel("OK");
-      okButton.addActionListener(this);
-      applyButton.setFont(new java.awt.Font("Verdana", 0, 11));
-      applyButton.setLabel("Apply");
-      applyButton.addActionListener(this);
-      cancelButton.setFont(new java.awt.Font("Verdana", 0, 11));
-      cancelButton.setLabel("Cancel");
-      cancelButton.addActionListener(this);
-      this.setBackground(new Color(212, 208, 223));
-      okcancelPanel.setBounds(new Rectangle(0, 265, 400, 35));
-      buttonPanel.setBounds(new Rectangle(0, 123, 400, 142));
-      rScroller.setMaximum(256);
-      rScroller.setMinimum(0);
-      rScroller.setOrientation(0);
-      rScroller.setUnitIncrement(1);
-  rScroller.setVisibleAmount(1);
-  rScroller.setBounds(new Rectangle(36, 27, 119, 19));
-  rScroller.addAdjustmentListener(this);
-  label1.setAlignment(Label.RIGHT);
-  label1.setText("R");
-  label1.setBounds(new Rectangle(19, 30, 16, 15));
-  rText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
-  rText.setText("0        ");
-  rText.setBounds(new Rectangle(156, 27, 53, 19));
-  rText.addActionListener(this);
-  label4.setAlignment(Label.RIGHT);
-  label4.setText("G");
-  label4.setBounds(new Rectangle(15, 56, 20, 15));
-  gScroller.setMaximum(256);
-      gScroller.setMinimum(0);
-      gScroller.setOrientation(0);
-      gScroller.setUnitIncrement(1);
-  gScroller.setVisibleAmount(1);
-  gScroller.setBounds(new Rectangle(35, 52, 120, 20));
-  gScroller.addAdjustmentListener(this);
-  gText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
-  gText.setText("0        ");
-  gText.setBounds(new Rectangle(156, 52, 53, 20));
-  gText.addActionListener(this);
-  label5.setAlignment(Label.RIGHT);
-  label5.setText("B");
-  label5.setBounds(new Rectangle(14, 82, 20, 15));
-  bScroller.setMaximum(256);
-      bScroller.setMinimum(0);
-      bScroller.setOrientation(0);
-      bScroller.setUnitIncrement(1);
-  bScroller.setVisibleAmount(1);
-  bScroller.setBounds(new Rectangle(35, 78, 120, 20));
-  bScroller.addAdjustmentListener(this);
-  bText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
-  bText.setText("0        ");
-  bText.setBounds(new Rectangle(157, 78, 52, 20));
-  bText.addActionListener(this);
-  target.setBackground(Color.black);
-      target.setBounds(new Rectangle(229, 26, 134, 79));
-      this.add(okcancelPanel, null);
-      okcancelPanel.add(okButton, null);
-      okcancelPanel.add(applyButton, null);
-      okcancelPanel.add(cancelButton, null);
-      this.add(buttonPanel, null);
-  this.add(target, null);
-  this.add(gScroller);
-  this.add(rScroller);
-  this.add(bScroller);
-  this.add(label5);
-  this.add(label4);
-  this.add(label1);
-  this.add(gText);
-  this.add(rText);
-  this.add(bText);
-}
+  private void jbInit()
+      throws Exception
+  {
+    this.setLayout(null);
+    buttonPanel.setLayout(gridLayout);
+    gridLayout.setColumns(6);
+    gridLayout.setRows(4);
+    okButton.setFont(new java.awt.Font("Verdana", 0, 11));
+    okButton.setLabel("OK");
+    okButton.addActionListener(this);
+    applyButton.setFont(new java.awt.Font("Verdana", 0, 11));
+    applyButton.setLabel("Apply");
+    applyButton.addActionListener(this);
+    cancelButton.setFont(new java.awt.Font("Verdana", 0, 11));
+    cancelButton.setLabel("Cancel");
+    cancelButton.addActionListener(this);
+    this.setBackground(new Color(212, 208, 223));
+    okcancelPanel.setBounds(new Rectangle(0, 265, 400, 35));
+    buttonPanel.setBounds(new Rectangle(0, 123, 400, 142));
+    rScroller.setMaximum(256);
+    rScroller.setMinimum(0);
+    rScroller.setOrientation(0);
+    rScroller.setUnitIncrement(1);
+    rScroller.setVisibleAmount(1);
+    rScroller.setBounds(new Rectangle(36, 27, 119, 19));
+    rScroller.addAdjustmentListener(this);
+    label1.setAlignment(Label.RIGHT);
+    label1.setText("R");
+    label1.setBounds(new Rectangle(19, 30, 16, 15));
+    rText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
+    rText.setText("0        ");
+    rText.setBounds(new Rectangle(156, 27, 53, 19));
+    rText.addActionListener(this);
+    label4.setAlignment(Label.RIGHT);
+    label4.setText("G");
+    label4.setBounds(new Rectangle(15, 56, 20, 15));
+    gScroller.setMaximum(256);
+    gScroller.setMinimum(0);
+    gScroller.setOrientation(0);
+    gScroller.setUnitIncrement(1);
+    gScroller.setVisibleAmount(1);
+    gScroller.setBounds(new Rectangle(35, 52, 120, 20));
+    gScroller.addAdjustmentListener(this);
+    gText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
+    gText.setText("0        ");
+    gText.setBounds(new Rectangle(156, 52, 53, 20));
+    gText.addActionListener(this);
+    label5.setAlignment(Label.RIGHT);
+    label5.setText("B");
+    label5.setBounds(new Rectangle(14, 82, 20, 15));
+    bScroller.setMaximum(256);
+    bScroller.setMinimum(0);
+    bScroller.setOrientation(0);
+    bScroller.setUnitIncrement(1);
+    bScroller.setVisibleAmount(1);
+    bScroller.setBounds(new Rectangle(35, 78, 120, 20));
+    bScroller.addAdjustmentListener(this);
+    bText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10));
+    bText.setText("0        ");
+    bText.setBounds(new Rectangle(157, 78, 52, 20));
+    bText.addActionListener(this);
+    target.setBackground(Color.black);
+    target.setBounds(new Rectangle(229, 26, 134, 79));
+    this.add(okcancelPanel, null);
+    okcancelPanel.add(okButton, null);
+    okcancelPanel.add(applyButton, null);
+    okcancelPanel.add(cancelButton, null);
+    this.add(buttonPanel, null);
+    this.add(target, null);
+    this.add(gScroller);
+    this.add(rScroller);
+    this.add(bScroller);
+    this.add(label5);
+    this.add(label4);
+    this.add(label1);
+    this.add(gText);
+    this.add(rText);
+    this.add(bText);
+  }
 
 }