X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FUserDefinedColours.java;h=7220321b78c9789d2835cc8b4846ae9529e2640a;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=86e1f5d17dc29caf884d2642c7b9fcd60a0ebb98;hpb=9fff97021c2c637e426f6971d54dcf3fd4191985;p=jalview.git diff --git a/src/jalview/appletgui/UserDefinedColours.java b/src/jalview/appletgui/UserDefinedColours.java index 86e1f5d..7220321 100755 --- a/src/jalview/appletgui/UserDefinedColours.java +++ b/src/jalview/appletgui/UserDefinedColours.java @@ -1,258 +1,687 @@ -/* - * Jalview - A Sequence Alignment Editor and Viewer - * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA - */ - -package jalview.appletgui; - -import java.io.*; -import java.util.*; - -import java.awt.*; -import java.awt.event.*; - -import jalview.datamodel.*; -import jalview.jbappletgui.*; -import jalview.schemes.*; - -public class UserDefinedColours - extends GUserDefinedColours -{ - - AlignmentPanel ap; - SequenceGroup seqGroup; - Button selectedButton; - Vector oldColours = new Vector(); - ColourSchemeI oldColourScheme; - Frame frame; - - int R = 0, G = 0, B = 0; - - public ColourSchemeI loadDefaultColours() - { - // NOT IMPLEMENTED YET IN APPLET VERSION - return null; - } - - public UserDefinedColours(AlignmentPanel ap, SequenceGroup sg) - { - super(); - frame = new Frame(); - frame.add(this); - jalview.bin.JalviewLite.addFrame(frame, "User defined colours", 420, 345); - - if (sg != null) - { - frame.setTitle(frame.getTitle() + " (" + sg.getName() + ")"); - } - - this.ap = ap; - seqGroup = sg; - - if (seqGroup != null) - { - oldColourScheme = seqGroup.cs; - } - else - { - oldColourScheme = ap.av.getGlobalColourScheme(); - } - - for (int i = 0; i < 20; i++) - { - makeButton(ResidueProperties.aa2Triplet.get(ResidueProperties.aa[i]) + - "", ResidueProperties.aa[i]); - } - - makeButton("B", "B"); - makeButton("Z", "Z"); - makeButton("X", "X"); - makeButton("Gap", "'.','-',' '"); - - } - - protected void rText_actionPerformed(ActionEvent e) - { - try - { - int i = Integer.parseInt(rText.getText()); - rScroller.setValue(i); - } - catch (NumberFormatException ex) - {} - } - - protected void gText_actionPerformed(ActionEvent e) - { - try - { - int i = Integer.parseInt(gText.getText()); - gScroller.setValue(i); - } - catch (NumberFormatException ex) - {} - - } - - protected void bText_actionPerformed(ActionEvent e) - { - try - { - int i = Integer.parseInt(bText.getText()); - bScroller.setValue(i); - } - catch (NumberFormatException ex) - {} - - } - - protected void rScroller_adjustmentValueChanged(AdjustmentEvent e) - { - R = rScroller.getValue(); - rText.setText(R + ""); - colourChanged(); - } - - protected void gScroller_adjustmentValueChanged(AdjustmentEvent e) - { - G = gScroller.getValue(); - gText.setText(G + ""); - colourChanged(); - } - - protected void bScroller_adjustmentValueChanged(AdjustmentEvent e) - { - B = bScroller.getValue(); - bText.setText(B + ""); - colourChanged(); - } - - public void colourChanged() - { - Color col = new Color(R, G, B); - target.setBackground(col); - - if (selectedButton != null) - { - selectedButton.setBackground(col); - } - } - - public void colourButtonPressed(MouseEvent e) - { - selectedButton = (Button) e.getSource(); - Color col = selectedButton.getBackground(); - R = col.getRed(); - G = col.getGreen(); - B = col.getBlue(); - rScroller.setValue(R); - gScroller.setValue(G); - bScroller.setValue(B); - rText.setText(R + ""); - gText.setText(G + ""); - bText.setText(B + ""); - - colourChanged(); - } - - void makeButton(String label, String aa) - { - final Button button = new Button(); - Color col = Color.white; - - try - { - col = oldColourScheme.findColour(aa, -1); - } - catch (Exception ex) - {} - - button.setBackground(col); - oldColours.addElement(col); - button.setLabel(label); - button.setForeground(col.darker().darker().darker()); - button.setFont(new java.awt.Font("Verdana", 1, 10)); - button.addMouseListener(new java.awt.event.MouseAdapter() - { - public void mouseClicked(MouseEvent e) - { - colourButtonPressed(e); - } - }); - - buttonPanel.add(button, null); - } - - protected void okButton_actionPerformed(ActionEvent e) - { - applyButton_actionPerformed(null); - frame.setVisible(false); - } - - protected void applyButton_actionPerformed(ActionEvent e) - { - - Color[] newColours = new Color[24]; - for (int i = 0; i < 24; i++) - { - Button button = (Button) buttonPanel.getComponent(i); - newColours[i] = button.getBackground(); - } - - UserColourScheme ucs = new UserColourScheme(newColours); - ucs.setThreshold(0, ap.av.getIgnoreGapsConsensus()); - - if (seqGroup != null) - { - seqGroup.cs = ucs; - } - else - { - ap.av.setGlobalColourScheme(ucs); - } - - ap.repaint(); - } - - - protected void cancelButton_actionPerformed(ActionEvent e) - { - - Color[] newColours = new Color[24]; - for (int i = 0; i < 24; i++) - { - newColours[i] = (Color) oldColours.elementAt(i); - buttonPanel.getComponent(i).setBackground(newColours[i]); - } - - UserColourScheme ucs = new UserColourScheme(newColours); - - if (seqGroup != null) - { - seqGroup.cs = ucs; - } - else - { - ap.av.setGlobalColourScheme(ucs); - } - - ap.repaint(); - - frame.setVisible(false); - } - -} +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + */ +package jalview.appletgui; + +import java.util.*; + +import java.awt.*; +import java.awt.event.*; + +import jalview.datamodel.*; +import jalview.schemes.*; + +public class UserDefinedColours extends Panel implements ActionListener, + AdjustmentListener +{ + + AlignmentPanel ap; + + SequenceGroup seqGroup; + + Button selectedButton; + + Vector oldColours = new Vector(); + + ColourSchemeI oldColourScheme; + + Frame frame; + + MCview.AppletPDBCanvas pdbcanvas; + + AppletJmol jmol; + + Dialog dialog; + + Object caller; + + String originalLabel; + + Object originalColour; + + int R = 0, G = 0, B = 0; + + public ColourSchemeI loadDefaultColours() + { + // NOT IMPLEMENTED YET IN APPLET VERSION + return null; + } + + public UserDefinedColours(AlignmentPanel ap, SequenceGroup sg) + { + this.ap = ap; + seqGroup = sg; + + if (seqGroup != null) + { + oldColourScheme = seqGroup.cs; + } + else + { + oldColourScheme = ap.av.getGlobalColourScheme(); + } + + init(); + } + + public UserDefinedColours(MCview.AppletPDBCanvas pdb) + { + this.pdbcanvas = pdb; + init(); + } + + public UserDefinedColours(AppletJmol jmol) + { + this.jmol = jmol; + init(); + } + + public UserDefinedColours(FeatureRenderer fr, Frame alignframe) + { + caller = fr; + originalColour = fr.colourPanel.getBackground(); + originalLabel = "Feature Colour"; + setForDialog("Select Feature Colour", alignframe); + setTargetColour(fr.colourPanel.getBackground()); + dialog.setVisible(true); + } + + public UserDefinedColours(Component caller, Color col1, Frame alignframe) + { + this(caller, col1, alignframe, "Select Colour"); + } + + /** + * Makes a dialog to choose the colour + * + * @param caller + * - handles events + * @param col1 + * - original colour + * @param alignframe + * - the parent Frame for the dialog + * @param title + * - window title + */ + public UserDefinedColours(Component caller, Color col1, Frame alignframe, + String title) + { + this.caller = caller; + originalColour = col1; + originalLabel = title; + setForDialog(title, alignframe); + setTargetColour(col1); + dialog.setVisible(true); + } + + /** + * feature colour chooser + * + * @param caller + * @param label + * @param colour + */ + public UserDefinedColours(Object caller, String label, Color colour) + { + this(caller, label, colour, colour); + } + + /** + * feature colour chooser when changing style to single color + * + * @param me + * @param type + * @param graduatedColor + */ + public UserDefinedColours(FeatureSettings me, String type, + GraduatedColor graduatedColor) + { + this(me, type, graduatedColor, graduatedColor.getMaxColor()); + } + + private UserDefinedColours(Object caller, String label, Object ocolour, + Color colour) + { + this.caller = caller; + originalColour = ocolour; + originalLabel = label; + init(); + remove(buttonPanel); + + setTargetColour(colour); + + okcancelPanel.setBounds(new Rectangle(0, 113, 400, 35)); + frame.setTitle("User Defined Colours - " + label); + frame.setSize(420, 200); + } + + void setForDialog(String title, Container alignframe) + { + init(); + frame.setVisible(false); + remove(buttonPanel); + if (alignframe instanceof Frame) + { + dialog = new Dialog((Frame) alignframe, title, true); + } + else + { + // if (alignframe instanceof JVDialog){ + // // not 1.1 compatible! + // dialog = new Dialog(((JVDialog)alignframe), title, true); + // } else { + throw new Error("Unsupported owner for User Colour scheme dialog."); + } + + dialog.add(this); + this.setSize(400, 123); + okcancelPanel.setBounds(new Rectangle(0, 123, 400, 35)); + int height = 160 + alignframe.getInsets().top + getInsets().bottom; + int width = 400; + + dialog.setBounds(alignframe.getBounds().x + + (alignframe.getSize().width - width) / 2, + alignframe.getBounds().y + + (alignframe.getSize().height - height) / 2, width, + height); + + } + + public void actionPerformed(ActionEvent evt) + { + if (evt.getSource() == okButton) + { + okButton_actionPerformed(); + } + else if (evt.getSource() == applyButton) + { + applyButton_actionPerformed(); + } + else if (evt.getSource() == cancelButton) + { + cancelButton_actionPerformed(); + } + else if (evt.getSource() == rText) + { + rText_actionPerformed(); + } + else if (evt.getSource() == gText) + { + gText_actionPerformed(); + } + else if (evt.getSource() == bText) + { + bText_actionPerformed(); + } + } + + public void adjustmentValueChanged(AdjustmentEvent evt) + { + if (evt.getSource() == rScroller) + { + rScroller_adjustmentValueChanged(); + } + else if (evt.getSource() == gScroller) + { + gScroller_adjustmentValueChanged(); + } + else if (evt.getSource() == bScroller) + { + bScroller_adjustmentValueChanged(); + } + } + + void init() + { + try + { + jbInit(); + } catch (Exception e) + { + e.printStackTrace(); + } + frame = new Frame(); + frame.add(this); + jalview.bin.JalviewLite.addFrame(frame, "User defined colours", 420, + 345); + + if (seqGroup != null) + { + frame.setTitle(frame.getTitle() + " (" + seqGroup.getName() + ")"); + } + + for (int i = 0; i < 20; i++) + { + makeButton(ResidueProperties.aa2Triplet.get(ResidueProperties.aa[i]) + + "", ResidueProperties.aa[i]); + } + + makeButton("B", "B"); + makeButton("Z", "Z"); + makeButton("X", "X"); + makeButton("Gap", "'.','-',' '"); + + validate(); + } + + protected void rText_actionPerformed() + { + try + { + int i = Integer.parseInt(rText.getText()); + rScroller.setValue(i); + rScroller_adjustmentValueChanged(); + } catch (NumberFormatException ex) + { + } + } + + protected void gText_actionPerformed() + { + try + { + int i = Integer.parseInt(gText.getText()); + gScroller.setValue(i); + gScroller_adjustmentValueChanged(); + } catch (NumberFormatException ex) + { + } + + } + + protected void bText_actionPerformed() + { + try + { + int i = Integer.parseInt(bText.getText()); + bScroller.setValue(i); + bScroller_adjustmentValueChanged(); + } catch (NumberFormatException ex) + { + } + + } + + protected void rScroller_adjustmentValueChanged() + { + R = rScroller.getValue(); + rText.setText(R + ""); + colourChanged(); + } + + protected void gScroller_adjustmentValueChanged() + { + G = gScroller.getValue(); + gText.setText(G + ""); + colourChanged(); + } + + protected void bScroller_adjustmentValueChanged() + { + B = bScroller.getValue(); + bText.setText(B + ""); + colourChanged(); + } + + public void colourChanged() + { + Color col = new Color(R, G, B); + target.setBackground(col); + target.repaint(); + + if (selectedButton != null) + { + selectedButton.setBackground(col); + selectedButton.repaint(); + } + } + + void setTargetColour(Color col) + { + R = col.getRed(); + G = col.getGreen(); + B = col.getBlue(); + + rScroller.setValue(R); + gScroller.setValue(G); + bScroller.setValue(B); + rText.setText(R + ""); + gText.setText(G + ""); + bText.setText(B + ""); + colourChanged(); + } + + public void colourButtonPressed(MouseEvent e) + { + selectedButton = (Button) e.getSource(); + setTargetColour(selectedButton.getBackground()); + } + + void makeButton(String label, String aa) + { + final Button button = new Button(); + Color col = Color.white; + if (oldColourScheme != null) + { + try + { + col = oldColourScheme.findColour(aa.charAt(0), -1); + } catch (Exception ex) + { + } + } + button.setBackground(col); + oldColours.addElement(col); + button.setLabel(label); + button.setForeground(col.darker().darker().darker()); + button.setFont(new java.awt.Font("Verdana", 1, 10)); + button.addMouseListener(new java.awt.event.MouseAdapter() + { + public void mousePressed(MouseEvent e) + { + colourButtonPressed(e); + } + }); + + buttonPanel.add(button, null); + } + + protected void okButton_actionPerformed() + { + applyButton_actionPerformed(); + if (dialog != null) + dialog.setVisible(false); + + frame.setVisible(false); + } + + public Color getColor() + { + return new Color(R, G, B); + } + + protected void applyButton_actionPerformed() + { + if (caller != null) + { + if (caller instanceof FeatureSettings) + { + ((FeatureSettings) caller).setUserColour(originalLabel, getColor()); + } + else if (caller instanceof AnnotationColourChooser) + { + if (originalLabel.equals("Min Colour")) + { + ((AnnotationColourChooser) caller) + .minColour_actionPerformed(getColor()); + } + else + { + ((AnnotationColourChooser) caller) + .maxColour_actionPerformed(getColor()); + } + } + else if (caller instanceof FeatureRenderer) + { + ((FeatureRenderer) caller).colourPanel.updateColor(getColor()); + } + else if (caller instanceof FeatureColourChooser) + { + if (originalLabel.indexOf("inimum") > -1) + { + ((FeatureColourChooser) caller) + .minColour_actionPerformed(getColor()); + } + else + { + ((FeatureColourChooser) caller) + .maxColour_actionPerformed(getColor()); + } + } + + return; + } + + Color[] newColours = new Color[24]; + for (int i = 0; i < 24; i++) + { + Button button = (Button) buttonPanel.getComponent(i); + newColours[i] = button.getBackground(); + } + + UserColourScheme ucs = new UserColourScheme(newColours); + if (ap != null) + { + ucs.setThreshold(0, ap.av.getIgnoreGapsConsensus()); + } + + if (ap != null) + { + if (seqGroup != null) + { + seqGroup.cs = ucs; + } + else + { + ap.av.setGlobalColourScheme(ucs); + } + ap.seqPanel.seqCanvas.img = null; + ap.paintAlignment(true); + } + else if (jmol != null) + { + jmol.setJalviewColourScheme(ucs); + } + else if (pdbcanvas != null) + { + pdbcanvas.setColours(ucs); + } + } + + protected void cancelButton_actionPerformed() + { + if (caller != null) + { + if (caller instanceof FeatureSettings) + { + ((FeatureSettings) caller).setUserColour(originalLabel, + originalColour); + } + else if (caller instanceof AnnotationColourChooser) + { + if (originalLabel.equals("Min Colour")) + { + ((AnnotationColourChooser) caller) + .minColour_actionPerformed((Color) originalColour); + } + else + { + ((AnnotationColourChooser) caller) + .maxColour_actionPerformed((Color) originalColour); + } + } + else if (caller instanceof FeatureRenderer) + { + ((FeatureRenderer) caller).colourPanel.updateColor(originalColour); + + } + + else if (caller instanceof FeatureColourChooser) + { + if (originalLabel.indexOf("inimum") > -1) + { + ((FeatureColourChooser) caller) + .minColour_actionPerformed((Color) originalColour); + } + else + { + ((FeatureColourChooser) caller) + .maxColour_actionPerformed((Color) originalColour); + } + } + if (dialog != null) + dialog.setVisible(false); + + frame.setVisible(false); + return; + } + + Color[] newColours = new Color[24]; + for (int i = 0; i < 24; i++) + { + newColours[i] = (Color) oldColours.elementAt(i); + buttonPanel.getComponent(i).setBackground(newColours[i]); + } + + UserColourScheme ucs = new UserColourScheme(newColours); + + if (ap != null) + { + if (seqGroup != null) + { + seqGroup.cs = ucs; + } + else + { + ap.av.setGlobalColourScheme(ucs); + } + ap.paintAlignment(true); + } + else if (jmol != null) + { + jmol.setJalviewColourScheme(ucs); + } + else if (pdbcanvas != null) + { + pdbcanvas.pdb.setColours(ucs); + } + + frame.setVisible(false); + } + + protected Panel buttonPanel = new Panel(); + + protected GridLayout gridLayout = new GridLayout(); + + Panel okcancelPanel = new Panel(); + + protected Button okButton = new Button(); + + protected Button applyButton = new Button(); + + protected Button cancelButton = new Button(); + + protected Scrollbar rScroller = new Scrollbar(); + + Label label1 = new Label(); + + protected TextField rText = new TextField(); + + Label label4 = new Label(); + + protected Scrollbar gScroller = new Scrollbar(); + + protected TextField gText = new TextField(); + + Label label5 = new Label(); + + protected Scrollbar bScroller = new Scrollbar(); + + protected TextField bText = new TextField(); + + protected Panel target = new Panel(); + + private void jbInit() throws Exception + { + this.setLayout(null); + buttonPanel.setLayout(gridLayout); + gridLayout.setColumns(6); + gridLayout.setRows(4); + okButton.setFont(new java.awt.Font("Verdana", 0, 11)); + okButton.setLabel("OK"); + okButton.addActionListener(this); + applyButton.setFont(new java.awt.Font("Verdana", 0, 11)); + applyButton.setLabel("Apply"); + applyButton.addActionListener(this); + cancelButton.setFont(new java.awt.Font("Verdana", 0, 11)); + cancelButton.setLabel("Cancel"); + cancelButton.addActionListener(this); + this.setBackground(new Color(212, 208, 223)); + okcancelPanel.setBounds(new Rectangle(0, 265, 400, 35)); + buttonPanel.setBounds(new Rectangle(0, 123, 400, 142)); + rScroller.setMaximum(256); + rScroller.setMinimum(0); + rScroller.setOrientation(0); + rScroller.setUnitIncrement(1); + rScroller.setVisibleAmount(1); + rScroller.setBounds(new Rectangle(36, 27, 119, 19)); + rScroller.addAdjustmentListener(this); + label1.setAlignment(Label.RIGHT); + label1.setText("R"); + label1.setBounds(new Rectangle(19, 30, 16, 15)); + rText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10)); + rText.setText("0 "); + rText.setBounds(new Rectangle(156, 27, 53, 19)); + rText.addActionListener(this); + label4.setAlignment(Label.RIGHT); + label4.setText("G"); + label4.setBounds(new Rectangle(15, 56, 20, 15)); + gScroller.setMaximum(256); + gScroller.setMinimum(0); + gScroller.setOrientation(0); + gScroller.setUnitIncrement(1); + gScroller.setVisibleAmount(1); + gScroller.setBounds(new Rectangle(35, 52, 120, 20)); + gScroller.addAdjustmentListener(this); + gText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10)); + gText.setText("0 "); + gText.setBounds(new Rectangle(156, 52, 53, 20)); + gText.addActionListener(this); + label5.setAlignment(Label.RIGHT); + label5.setText("B"); + label5.setBounds(new Rectangle(14, 82, 20, 15)); + bScroller.setMaximum(256); + bScroller.setMinimum(0); + bScroller.setOrientation(0); + bScroller.setUnitIncrement(1); + bScroller.setVisibleAmount(1); + bScroller.setBounds(new Rectangle(35, 78, 120, 20)); + bScroller.addAdjustmentListener(this); + bText.setFont(new java.awt.Font("Dialog", Font.PLAIN, 10)); + bText.setText("0 "); + bText.setBounds(new Rectangle(157, 78, 52, 20)); + bText.addActionListener(this); + target.setBackground(Color.black); + target.setBounds(new Rectangle(229, 26, 134, 79)); + this.add(okcancelPanel, null); + okcancelPanel.add(okButton, null); + okcancelPanel.add(applyButton, null); + okcancelPanel.add(cancelButton, null); + this.add(buttonPanel, null); + this.add(target, null); + this.add(gScroller); + this.add(rScroller); + this.add(bScroller); + this.add(label5); + this.add(label4); + this.add(label1); + this.add(gText); + this.add(rText); + this.add(bText); + } + +}