X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FUserDefinedColours.java;h=95e36b5046067e5fed77cf2024e344f699dde3f7;hb=84724ad7b25f65eb6009f70d9b4cb89fc6796622;hp=c912dc36ba1242e64f3d768b16988870050ec46f;hpb=8e1be43e250107a4d86898bd554cf03098fa5957;p=jalview.git

diff --git a/src/jalview/appletgui/UserDefinedColours.java b/src/jalview/appletgui/UserDefinedColours.java
index c912dc3..95e36b5 100644
--- a/src/jalview/appletgui/UserDefinedColours.java
+++ b/src/jalview/appletgui/UserDefinedColours.java
@@ -22,7 +22,7 @@ package jalview.appletgui;
 
 import jalview.api.FeatureColourI;
 import jalview.datamodel.SequenceGroup;
-import jalview.schemes.CollectionColourScheme;
+import jalview.renderer.ResidueShader;
 import jalview.schemes.ColourSchemeI;
 import jalview.schemes.FeatureColour;
 import jalview.schemes.ResidueProperties;
@@ -410,7 +410,7 @@ public class UserDefinedColours extends Panel implements ActionListener,
     Color col = Color.white;
     if (oldColourScheme != null && oldColourScheme.isSimple())
     {
-      col = oldColourScheme.findColour(aa.charAt(0));
+      col = oldColourScheme.findColour(aa.charAt(0), 0, null, null, 0f);
     }
     button.setBackground(col);
     oldColours.addElement(col);
@@ -506,14 +506,14 @@ public class UserDefinedColours extends Panel implements ActionListener,
     {
       if (seqGroup != null)
       {
-        seqGroup.cs = new CollectionColourScheme(ucs);
+        seqGroup.cs = new ResidueShader(ucs);
         seqGroup.getGroupColourScheme().setThreshold(0,
                 ap.av.isIgnoreGapsConsensus());
       }
       else
       {
         ap.av.setGlobalColourScheme(ucs);
-        ap.av.getViewportColourScheme().setThreshold(0,
+        ap.av.getResidueShading().setThreshold(0,
                 ap.av.isIgnoreGapsConsensus());
       }
       ap.seqPanel.seqCanvas.img = null;
@@ -592,7 +592,7 @@ public class UserDefinedColours extends Panel implements ActionListener,
     {
       if (seqGroup != null)
       {
-        seqGroup.cs = new CollectionColourScheme(ucs);
+        seqGroup.cs = new ResidueShader(ucs);
       }
       else
       {