X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FUserDefinedColours.java;h=de1cff7a39b322288ff068d77029cbe0deb80621;hb=8c0f35fa0bee850e670c157157cc335d8a1a49ae;hp=af08b7529b6ac4bf1ef49123d03a88603992e25e;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git

diff --git a/src/jalview/appletgui/UserDefinedColours.java b/src/jalview/appletgui/UserDefinedColours.java
index af08b75..de1cff7 100755
--- a/src/jalview/appletgui/UserDefinedColours.java
+++ b/src/jalview/appletgui/UserDefinedColours.java
@@ -343,12 +343,11 @@ public class UserDefinedColours
         ap.av.setGlobalColourScheme(ucs);
       }
       ap.seqPanel.seqCanvas.img = null;
-      ap.repaint();
+      ap.paintAlignment(true);
     }
     else if (pdbcanvas != null)
     {
-      pdbcanvas.pdb.setColours(ucs);
-      pdbcanvas.updateSeqColours();
+      pdbcanvas.setColours(ucs);
     }
   }
 
@@ -397,7 +396,7 @@ public class UserDefinedColours
       {
         ap.av.setGlobalColourScheme(ucs);
       }
-      ap.repaint();
+      ap.paintAlignment(true);
     }
     else if (pdbcanvas != null)
     {