X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FCache.java;h=788cb02b8de367dc162db5f8479cbed2af761340;hb=006890b02106eb31841e6e84d75f1027434823e0;hp=e20b75d5c8f7151a227c01c4289abd2adc244a96;hpb=070cda5fcdc40af294bf8267f9c32104ce9bfd82;p=jalview.git diff --git a/src/jalview/bin/Cache.java b/src/jalview/bin/Cache.java index e20b75d..788cb02 100755 --- a/src/jalview/bin/Cache.java +++ b/src/jalview/bin/Cache.java @@ -38,6 +38,7 @@ import java.io.FileInputStream; import java.io.FileOutputStream; import java.io.InputStream; import java.io.InputStreamReader; +import java.net.URL; import java.text.DateFormat; import java.text.SimpleDateFormat; import java.util.Collections; @@ -278,8 +279,7 @@ public class Cache /** Default file is ~/.jalview_properties */ static String propertiesFile; - private static boolean propsAreReadOnly = Platform.isJS();/// ** @j2sNative - /// true || */false; + private static boolean propsAreReadOnly = Platform.isJS(); private final static String JS_PROPERTY_PREFIX = "jalview_"; @@ -397,16 +397,13 @@ public class Cache } // LOAD THE AUTHORS FROM THE authors.props file - String authorDetails = (Platform.isJS() ? null - : "jar:".concat(Cache.class.getProtectionDomain() - .getCodeSource().getLocation().toString() - .concat("!/authors.props"))); + String authorDetails = resolveResourceURLFor("/authors.props"); try { if (authorDetails != null) { - java.net.URL localJarFileURL = new java.net.URL(authorDetails); + URL localJarFileURL = new URL(authorDetails); InputStream in = localJarFileURL.openStream(); applicationProperties.load(in); in.close(); @@ -423,46 +420,7 @@ public class Cache applicationProperties.remove("YEAR"); } - // FIND THE VERSION NUMBER AND BUILD DATE FROM jalview.jar - // MUST FOLLOW READING OF LOCAL PROPERTIES FILE AS THE - // VERSION MAY HAVE CHANGED SINCE LAST USING JALVIEW - String buildDetails = (Platform.isJS() ? null - : "jar:".concat(Cache.class.getProtectionDomain() - .getCodeSource().getLocation().toString() - .concat("!/.build_properties"))); - if (buildDetails != null) - { - try - { - java.net.URL localJarFileURL = new java.net.URL(buildDetails); - InputStream in = localJarFileURL.openStream(); - applicationProperties.load(in); - in.close(); - } catch (Exception ex) - { - System.out.println("Error reading build details: " + ex); - buildDetails = null; - } - } - if (buildDetails == null) - { - applicationProperties.remove("VERSION"); - } - String jnlpVersion = System.getProperty("jalview.version"); - String codeVersion = getProperty("VERSION"); - String codeInstallation = getProperty("INSTALLATION"); - if (codeVersion == null) - { - // THIS SHOULD ONLY BE THE CASE WHEN TESTING!! - codeVersion = "Test"; - jnlpVersion = "Test"; - codeInstallation = ""; - } - else - { - codeInstallation = " (" + codeInstallation + ")"; - } - new BuildDetails(codeVersion, null, codeInstallation); + loadBuildProperties(false); SiftsSettings .setMapWithSifts(Cache.getDefault("MAP_WITH_SIFTS", false)); @@ -482,9 +440,6 @@ public class Cache "http://www.jalview.org/services/identifiers")); IdOrgSettings.setDownloadLocation(ID_ORG_FILE); - System.out - .println("Jalview Version: " + codeVersion + codeInstallation); - StructureImportSettings.setDefaultStructureFileFormat(jalview.bin.Cache .getDefault("PDB_DOWNLOAD_FORMAT", PDB_DOWNLOAD_FORMAT)); StructureImportSettings @@ -492,14 +447,18 @@ public class Cache // StructureImportSettings // .setDefaultPDBFileParser(jalview.bin.Cache.getDefault( // "DEFAULT_PDB_FILE_PARSER", DEFAULT_PDB_FILE_PARSER)); - // jnlpVersion will be null if we're using InstallAnywhere + + String jnlpVersion = System.getProperty("jalview.version"); + + // jnlpVersion will be null if a latest version check for the channel needs to + // be done // Dont do this check if running in headless mode + if (jnlpVersion == null && getDefault("VERSION_CHECK", true) && (System.getProperty("java.awt.headless") == null || System .getProperty("java.awt.headless").equals("false"))) { - - class VersionChecker extends Thread + new Thread() { @Override public void run() @@ -547,10 +506,7 @@ public class Cache setProperty("LATEST_VERSION", remoteVersion); } - } - - VersionChecker vc = new VersionChecker(); - vc.start(); + }.start(); } else { @@ -564,15 +520,83 @@ public class Cache } } - setProperty("VERSION", codeVersion); - // LOAD USERDEFINED COLOURS - jalview.bin.Cache - .initUserColourSchemes(getProperty("USER_DEFINED_COLOURS")); + Cache.initUserColourSchemes(getProperty("USER_DEFINED_COLOURS")); jalview.io.PIRFile.useModellerOutput = Cache.getDefault("PIR_MODELLER", false); } + /** + * construct a resource URL for the given absolute resource pathname + * + * @param resourcePath + * @return + */ + private static String resolveResourceURLFor(String resourcePath) + { + String url = null; + if (Platform.isJS() || !Cache.class.getProtectionDomain() + .getCodeSource().getLocation().toString().endsWith(".jar")) + { + try + { + url = Cache.class.getResource(resourcePath).toString(); + } catch (Exception ex) + { + System.err.println("Failed to resolve resource " + resourcePath + ": " + + ex.getMessage()); + } + } + else + { + url = "jar:".concat(Cache.class.getProtectionDomain().getCodeSource() + .getLocation().toString().concat("!" + resourcePath)); + } + return url; + } + + public static void loadBuildProperties(boolean reportVersion) + { + String codeInstallation = getProperty("INSTALLATION"); + boolean printVersion = codeInstallation == null; + + /* + * read build properties - from the Jalview jar for a Java distribution, + * or from codebase file in test or JalviewJS context + */ + try + { + String buildDetails = resolveResourceURLFor("/.build_properties"); + URL localJarFileURL = new URL(buildDetails); + InputStream in = localJarFileURL.openStream(); + applicationProperties.load(in); + in.close(); + } catch (Exception ex) + { + System.out.println("Error reading build details: " + ex); + applicationProperties.remove("VERSION"); + } + String codeVersion = getProperty("VERSION"); + codeInstallation = getProperty("INSTALLATION"); + + if (codeVersion == null) + { + // THIS SHOULD ONLY BE THE CASE WHEN TESTING!! + codeVersion = "Test"; + codeInstallation = ""; + } + else + { + codeInstallation = " (" + codeInstallation + ")"; + } + setProperty("VERSION", codeVersion); + new BuildDetails(codeVersion, null, codeInstallation); + if (printVersion && reportVersion) + { + System.out + .println("Jalview Version: " + codeVersion + codeInstallation); + } + } private static void deleteBuildProperties() { @@ -596,7 +620,13 @@ public class Cache */ public static String getProperty(String key) { - return applicationProperties.getProperty(key); + String prop = applicationProperties.getProperty(key); + if (prop == null && Platform.isJS()) + { + prop = applicationProperties.getProperty(Platform.getUniqueAppletID() + + "_" + JS_PROPERTY_PREFIX + key); + } + return prop; } /** @@ -659,7 +689,7 @@ public class Cache try { oldValue = applicationProperties.setProperty(key, obj); - if (!propsAreReadOnly) + if (propertiesFile != null && !propsAreReadOnly) { FileOutputStream out = new FileOutputStream(propertiesFile); applicationProperties.store(out, "---JalviewX Properties File---"); @@ -1083,18 +1113,65 @@ public class Cache } } - /** - * Add a known domain that implements access-control-allow-origin:* bh 2018 - * - * @param defaultUniprotDomain - */ - public static void addJ2SDirectDatabaseCall(String domain) - { - - /** - * @j2sNative - * - * J2S.addDirectDatabaseCall(domain); - */ - } + /** + * Initial logging information helper for various versions output + * + * @param prefix + * @param value + * @param defaultValue + */ + private static void appendIfNotNull(StringBuilder sb, String prefix, + String value, String suffix, String defaultValue) + { + if (value == null && defaultValue == null) + { + return; + } + String line = prefix + (value != null ? value : defaultValue) + suffix; + sb.append(line); + } + + /** + * + * @return Jalview version, build details and JVM platform version for console + */ + public static String getVersionDetailsForConsole() + { + StringBuilder sb = new StringBuilder(); + sb.append("Jalview Version: " + jalview.bin.Cache.getDefault("VERSION", "TEST")); + sb.append("\n"); + sb.append("Jalview Installation: " + + jalview.bin.Cache.getDefault("INSTALLATION", "unknown")); + sb.append("\n"); + sb.append("Build Date: " + jalview.bin.Cache.getDefault("BUILD_DATE", "unknown")); + sb.append("\n"); + sb.append("Java version: " + System.getProperty("java.version")); + sb.append("\n"); + sb.append(System.getProperty("os.arch") + " " + System.getProperty("os.name") + " " + System.getProperty("os.version")); + sb.append("\n"); + appendIfNotNull(sb, "Install4j version: ", + System.getProperty("sys.install4jVersion"), "\n", null); + appendIfNotNull(sb, "Install4j template version: ", + System.getProperty("installer_template_version"), "\n", null); + appendIfNotNull(sb, "Launcher version: ", + System.getProperty("launcher_version"), "\n", null); + if (jalview.bin.Cache.getDefault("VERSION", "TEST").equals("DEVELOPMENT")) { + appendIfNotNull(sb, "Getdown appdir: ", + System.getProperty("getdownappdir"), "\n", null); + appendIfNotNull(sb, "Java home: ", System.getProperty("java.home"), + "\n", "unknown"); + } + return sb.toString(); + } + + /** + * + * @return build details as reported in splashscreen + */ + public static String getBuildDetailsForSplash() + { + // consider returning more human friendly info + // eg 'built from Source' or update channel + return jalview.bin.Cache.getDefault("INSTALLATION", "unknown"); + } }