X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FCache.java;h=7911cd5bab0728fb6976ab5b4d2a60c25c04a801;hb=992b7f3bc70dbd2bb1749d7ab9b51eced013be23;hp=b49206732df92eed343bcd34c7feb56d1d96e739;hpb=d9b79c023346253c10dc907d1e75f509823266c4;p=jalview.git

diff --git a/src/jalview/bin/Cache.java b/src/jalview/bin/Cache.java
index b492067..7911cd5 100755
--- a/src/jalview/bin/Cache.java
+++ b/src/jalview/bin/Cache.java
@@ -20,6 +20,8 @@
  */
 package jalview.bin;
 
+import jalview.datamodel.DBRefSource;
+import jalview.ws.dbsources.Pdb;
 import jalview.ws.dbsources.das.api.DasSourceRegistryI;
 import jalview.ws.dbsources.das.datamodel.DasSourceRegistry;
 import jalview.ws.sifts.SiftsSettings;
@@ -221,6 +223,13 @@ public class Cache
           .getProperty("user.home")
           + File.separatorChar
           + ".sifts_downloads" + File.separatorChar;
+
+  private final static String DEFAULT_CACHE_THRESHOLD_IN_DAYS = "2";
+
+  private final static String DEFAULT_FAIL_SAFE_PID_THRESHOLD = "30";
+
+  private final static String DEFAULT_STRUCTURE_FORMAT = DBRefSource.PDB;
+
   /**
    * Initialises the Jalview Application Log
    */
@@ -406,9 +415,19 @@ public class Cache
     SiftsSettings.setSiftDownloadDirectory(jalview.bin.Cache.getDefault(
             "sifts_download_dir", DEFAULT_SIFTS_DOWNLOAD_DIR));
 
+    SiftsSettings.setFailSafePIDThreshold(jalview.bin.Cache.getDefault(
+            "sifts_fail_safe_pid_threshold",
+            DEFAULT_FAIL_SAFE_PID_THRESHOLD));
+
+    SiftsSettings.setCacheThresholdInDays(jalview.bin.Cache.getDefault(
+            "sifts_cache_threshold_in_days",
+            DEFAULT_CACHE_THRESHOLD_IN_DAYS));
+
     System.out
             .println("Jalview Version: " + codeVersion + codeInstallation);
 
+    Pdb.setCurrentDefaultFomart(jalview.bin.Cache.getDefault(
+            "DEFAULT_STRUCTURE_FORMAT", DEFAULT_STRUCTURE_FORMAT));
     // jnlpVersion will be null if we're using InstallAnywhere
     // Dont do this check if running in headless mode
     if (jnlpVersion == null