X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FCache.java;h=8a06b7bf797c8385fdec33d3191a77c6691924e7;hb=d043ce47fc710d3eb2629ba926a8a7417bd67d8c;hp=4e9f3916703daca978db0507beb2992301385b96;hpb=49db0dff1da16c3355b43a41498c1fc93ef47e91;p=jalview.git diff --git a/src/jalview/bin/Cache.java b/src/jalview/bin/Cache.java index 4e9f391..8a06b7b 100755 --- a/src/jalview/bin/Cache.java +++ b/src/jalview/bin/Cache.java @@ -47,15 +47,11 @@ import java.util.regex.Pattern; import javax.swing.LookAndFeel; import javax.swing.UIManager; -import org.apache.log4j.ConsoleAppender; -import org.apache.log4j.Level; -import org.apache.log4j.Logger; -import org.apache.log4j.SimpleLayout; - import jalview.bin.ApplicationSingletonProvider.ApplicationSingletonI; import jalview.datamodel.PDBEntry; import jalview.gui.Preferences; import jalview.gui.UserDefinedColours; +import jalview.log.JLoggerLog4j; import jalview.schemes.ColourSchemeLoader; import jalview.schemes.ColourSchemes; import jalview.schemes.UserColourScheme; @@ -176,6 +172,8 @@ import jalview.ws.sifts.SiftsSettings; *
  • FOLLOW_SELECTIONS (true) Controls whether a new alignment view should * respond to selections made in other alignments containing the same sequences. *
  • + *
  • SHOW_JWS2_SERVICES (true) when set to false, jalview will not + * auto-discover JABAWS services
  • *
  • JWS2HOSTURLS comma-separated list of URLs to try for JABAWS services
  • *
  • SHOW_WSDISCOVERY_ERRORS (true) Controls if the web service URL discovery * warning dialog box is displayed.
  • @@ -203,7 +201,13 @@ import jalview.ws.sifts.SiftsSettings; *
  • CHIMERA_PATH specify full path to Chimera program (if non-standard)
  • *
  • ID_ORG_HOSTURL location of jalview service providing identifiers.org urls *
  • - * + *
  • NONEWS - when set disables Jalview News from automatically appearing
  • + *
  • NOHTMLTEMPLATES - when set, the + * https://github.com/jalview/exporter-templates/tree/master/biojs repository is + * not downloaded automatically
  • + *
  • NOIDENTIFIERSSERVICE - when set, jalview won't automatically download + * available URL linkouts via www.jalview.org/services/identifiers
  • + *
  • * * Deprecated settings: *