X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FCache.java;h=fab075ee6e6f12b1da66cff4d215785b1f4b82b5;hb=3be300f0d9107885e183ae7c86b081c8e6c6780f;hp=f77c2f1c9cfe6af852e4dc9027029418cb991d34;hpb=1cf5b1661d41c1775a297fb084aa1099272c4571;p=jalview.git

diff --git a/src/jalview/bin/Cache.java b/src/jalview/bin/Cache.java
index f77c2f1..fab075e 100755
--- a/src/jalview/bin/Cache.java
+++ b/src/jalview/bin/Cache.java
@@ -17,7 +17,10 @@
  */
 package jalview.bin;
 
+import java.awt.Color;
 import java.io.*;
+import java.text.DateFormat;
+import java.text.SimpleDateFormat;
 import java.util.*;
 
 import org.apache.log4j.*;
@@ -39,9 +42,6 @@ import org.biojava.dasobert.dasregistry.Das1Source;
  * </li>
  * <li>logs.Jalview.Level - Cache.log stringified level. <br>
  * </li>
- * <li>DISCOVERY_START - Boolean - controls if discovery services are queried on
- * startup</li>
- * <li>DISCOVERY_URLS - comma separated list of Discovery Service endpoints.</li>
  * <li>SCREEN_WIDTH</li>
  * <li>SCREEN_HEIGHT</li>
  * <li>SCREEN_Y=285</li>
@@ -105,7 +105,7 @@ import org.biojava.dasobert.dasregistry.Das1Source;
  * <li>SHOW_MEMUSAGE boolean show memory usage and warning indicator on desktop
  * (false)</li>
  * <li>VERSION_CHECK (true) check for the latest release version from
- * www.jalview.org</li>
+ * www.jalview.org (or the alias given by the www.jalview.org property)</li>
  * <li>SHOW_NPFEATS_TOOLTIP (true) show non-positional features in the Sequence
  * ID tooltip</li>
  * <li>SHOW_DBREFS_TOOLTIP (true) show Database Cross References in the Sequence
@@ -129,13 +129,20 @@ import org.biojava.dasobert.dasregistry.Das1Source;
  * </li>
  * <li>SHOW_WSDISCOVERY_ERRORS (true) Controls if the web service URL discovery
  * warning dialog box is displayed.</li>
- * 
- * <li></li>
+ * <li>ANNOTATIONCOLOUR_MIN (orange) Shade used for minimum value of annotation when shading by annotation</li>
+ * <li>ANNOTATIONCOLOUR_MAX (red) Shade used for maximum value of annotation when shading by annotation</li>
+ * <li>www.jalview.org (http://www.jalview.org) a property enabling all HTTP requests to be redirected to a mirror of http://www.jalview.org</li>
  * 
  * <li></li>
  * 
  * </ul>
- * 
+ * Deprecated settings:
+ * <ul>
+ *  * <li>DISCOVERY_START - Boolean - controls if discovery services are queried on
+ * startup (JWS1 services only)</li>
+ * <li>DISCOVERY_URLS - comma separated list of Discovery Service endpoints. (JWS1 services only)</li>
+ * <li>SHOW_JWS1_SERVICES (true) enable or disable the original Jalview 2 services in the desktop GUI
+ * </ul>
  * @author $author$
  * @version $Revision$
  */
@@ -328,7 +335,7 @@ public class Cache
             System.setProperty("sun.net.client.defaultConnectTimeout",
                     "5000");
             java.net.URL url = new java.net.URL(
-                    "http://www.jalview.org/webstart/jalview.jnlp");
+                    Cache.getDefault("www.jalview.org", "http://www.jalview.org")+"/webstart/jalview.jnlp");
             BufferedReader in = new BufferedReader(new InputStreamReader(
                     url.openStream()));
             String line = null;
@@ -726,4 +733,72 @@ public class Cache
     }
   }
 
+  /**
+   * get the user's default colour if available
+   * @param property
+   * @param defcolour
+   * @return
+   */
+  public static Color getDefaultColour(String property, Color defcolour)
+  {
+    String colprop = getProperty(property);
+    if (colprop==null) {
+      return defcolour;
+    }
+    Color col = jalview.schemes.ColourSchemeProperty.getAWTColorFromName(colprop);
+    if (col==null)
+    {
+      try {
+        col = new jalview.schemes.UserColourScheme(colprop).findColour('A');
+      } catch (Exception ex)
+      {
+        log.warn("Couldn't parse '"+colprop+"' as a colour for "+property);
+        col=null;
+      }
+    }
+    return (col==null) ? defcolour: col;
+  }
+
+  /**
+   * store a colour as a Jalview user default property
+   * @param property
+   * @param colour     
+   */
+  public static void setColourProperty(String property, Color colour)
+  {
+    setProperty(property, jalview.util.Format
+          .getHexString(colour));
+  }
+
+  public static final DateFormat  date_format = SimpleDateFormat.getDateTimeInstance();
+
+  /**
+   * store a date in a jalview property
+   * @param string
+   * @param time
+   */
+  public static void setDateProperty(String property, Date time)
+  {
+    setProperty(property, date_format.format(time));
+  }
+  /**
+   * read a date stored in a jalview property
+   * @param property
+   * @return valid date as stored by setDateProperty, or null
+   * 
+   */
+  public static Date getDateProperty(String property)
+  {
+    String val = getProperty(property);
+    if (val!=null)
+    {
+      try {
+        return date_format.parse(val);
+      } catch (Exception ex)
+      {
+        System.err.println("Invalid or corrupt date in property '"+property+"' : value was '"+val+"'");
+      }
+    }
+    return null;
+  }
 }