X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FConsole.java;h=1b230eca871b91d51c54d661d5b87a399693a3a6;hb=ca160187a050f6d4e50158cd5b51f75c83a7179e;hp=c42d5195a451c3dd8a1cc79b7c64b9ac7e4c96e5;hpb=c932f0e85a8852824cdd8ce790af68682732c85c;p=jalview.git

diff --git a/src/jalview/bin/Console.java b/src/jalview/bin/Console.java
index c42d519..1b230ec 100644
--- a/src/jalview/bin/Console.java
+++ b/src/jalview/bin/Console.java
@@ -337,8 +337,8 @@ public class Console
   {
     // send message to stderr if an output file to stdout is expected
     if (!forceStdout && Jalview.getInstance() != null
-            && Jalview.getInstance().bootstrapArgs != null
-            && Jalview.getInstance().bootstrapArgs.outputToStdout())
+            && Jalview.getInstance().getBootstrapArgs() != null
+            && Jalview.getInstance().getBootstrapArgs().outputToStdout())
     {
       return System.err;
     }
@@ -382,6 +382,16 @@ public class Console
     System.err.println(message);
   }
 
+  public static void debugPrintStackTrace(Throwable t)
+  {
+    if (!isDebugEnabled())
+    {
+      return;
+    }
+    // send message to stderr if output to stdout is expected
+    printStackTrace(t);
+  }
+
   public static void printStackTrace(Throwable t)
   {
     // send message to stderr if output to stdout is expected