X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FConsole.java;h=1b230eca871b91d51c54d661d5b87a399693a3a6;hb=refs%2Fheads%2Ffeature%2FJAL-629_--output_-_means_output_to_STDOUT;hp=20926cda48128d0df8f37a0952549e1b6fe485ed;hpb=0826cbb5798327ccde7e5a65204bb2dfc7f9bbbb;p=jalview.git

diff --git a/src/jalview/bin/Console.java b/src/jalview/bin/Console.java
index 20926cd..1b230ec 100644
--- a/src/jalview/bin/Console.java
+++ b/src/jalview/bin/Console.java
@@ -337,8 +337,8 @@ public class Console
   {
     // send message to stderr if an output file to stdout is expected
     if (!forceStdout && Jalview.getInstance() != null
-            && Jalview.getInstance().bootstrapArgs != null
-            && Jalview.getInstance().bootstrapArgs.outputToStdout())
+            && Jalview.getInstance().getBootstrapArgs() != null
+            && Jalview.getInstance().getBootstrapArgs().outputToStdout())
     {
       return System.err;
     }